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LOC_000MJ4Z.1
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USA/22_3413/2022-08-22
J. Hyeon,
Z. H. Helal,
N. F. Soriano,
D. H. Chung,
A. Hunt &
G. Risatti
The University of Connecticut, Dept. of Pathobiology & Veterinary Science
Sample details
Collection date
2022-08-22
Earliest release date
2025-06-04
Sampling location
USA (Connecticut)
Isolate name
22_3413
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 17:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-06-04
NCBI update date
2025-06-04
INSDC accession
PV126607.1
Host
Host
Accipiter cooperii
Submission details
Submission ID
PV126607.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:57:25 UTC
Date released
2026-03-10 18:20:31 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000MJ4Z.1.embl
Alignment and QC
Total SNPs
129
Total inserted nucs
3
Total deleted nucs
368
Length
10401 (97.6%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
M
29
V
NS2A:
L
95
F
NS2A:
R
188
K
NS2B:
A
103
V
NS3:
T
27
A
NS3:
T
249
P
NS3:
I
356
T
NS3:
H
559
Y
NS4A:
V
85
A
NS4B:
I
240
M
NS5:
K
177
R
capsid:
I
95
V
env:
K
93
R
env:
T
126
I
env:
I
159
A
prM:
F
155
L
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
340
T
T
348
C
A
379
G
C
435
T
C
450
T
A
630
G
G
741
A
G
813
A
T
928
C
T
1014
C
C
1089
T
T
1233
G
T
1442
C
C
1465
T
G
1662
A
C
1750
T
T
1776
C
T
1932
C
Show more
Deletions
10398-10405, 10414-10418, 10426-10434, 10439-10498, 10505-10513, 10521-10532, 10545-10576, 10589-10595, 10602-10629, 10649-10668, 10681-10858
Insertions
ins_10421:G, ins_10644:TG
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
M
29
V
NS2A
NS2A:
L
95
F
NS2A:
R
188
K
NS3
NS3:
T
27
A
NS3:
H
559
Y
NS4B
NS4B:
I
240
M
capsid
capsid:
I
95
V
env
env:
V
159
A
env:
L
167
F
prM
prM:
F
155
L
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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