This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
West Nile Virus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
West Nile Virus
|
Browse data
Submit sequences
LOC_000MJ15.1
Download
Download FASTA
Download metadata TSV
Display Name: Hungary/LOC_000MJ15.1/2023-10-05
A. Nagy,
G. E. Toth,
D. Cadar &
K. Kerenyi
Sample details
Collection date
2023-10-05
Collection date (lower bound)
2023-10-05
Collection date (upper bound)
2023-10-05
Earliest release date
2025-05-13
Collection country
Hungary
Collection subdivision level 1
Mezobereny
Isolate name
5408
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-10-27 14:17
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses
INSDC
NCBI release date
2025-05-13
NCBI update date
2025-05-13
INSDC accession
PV596761.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
10770
Total SNPs
1598
Total inserted nucs
34
Total deleted nucs
19
Total ambiguous nucs
0
Total unknown nucs
3108
Total frame shifts
0
Completeness
69.34%
Total stop codons
0
Submission details
Submission ID
PV596761.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-27 14:17:35 UTC
Date released
2025-10-27 14:38:45 UTC
Lineage
Lineage
2
Files
Annotations
LOC_000MJ15.1.embl
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
123
T
G
126
A
G
128
A
A
156
T
T
167
G
G
168
A
T
180
A
T
199
C
C
204
T
C
210
T
C
216
G
G
219
A
G
222
C
A
231
T
T
234
C
C
246
T
C
255
T
G
363
A
Show more
Deletions
6994-6996, 10467-10470, 10484-10487, 10494-10501
Insertions
ins_7006:TTGAGA, ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10452:AGA, ins_10461:AG
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
M
15
L
NS1
NS1:
Y
34
F
NS1:
K
44
R
NS1:
K
51
A
NS1:
V
71
I
NS1:
E
94
N
NS1:
S
99
A
NS1:
T
105
A
NS1:
K
170
R
NS1:
V
171
I
NS1:
S
174
T
NS1:
L
192
M
NS1:
I
194
V
NS1:
R
205
G
NS1:
L
287
I
NS1:
E
289
D
NS1:
T
298
A
NS1:
Y
323
F
NS1:
D
326
E
Show more
NS2A
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
R
122
K
NS2A:
Q
123
N
NS2A:
R
167
K
NS2A:
I
183
V
NS2A:
R
188
K
NS2A:
A
193
S
NS2A:
S
201
C
NS2A:
L
203
I
NS2A:
L
212
V
NS2A:
I
223
M
NS2B
NS2B:
E
73
K
NS2B:
M
88
I
NS2B:
V
103
A
NS2B:
V
119
I
NS2B:
V
120
I
NS3
NS3:
K
11
R
NS3:
Q
92
H
NS3:
D
172
E
NS3:
I
175
A
NS3:
R
203
K
NS3:
R
215
K
NS3:
R
218
K
NS3:
A
233
S
NS3:
V
283
I
NS3:
S
302
A
NS3:
S
331
A
NS3:
L
336
M
NS3:
S
347
T
NS3:
T
356
V
NS3:
T
436
E
NS3:
E
439
D
NS3:
V
450
I
NS3:
L
537
F
Show more
NS4A
NS4A:
T
64
S
NS4A:
M
65
L
NS4A:
A
85
V
NS4A:
V
86
I
NS4A:
V
89
A
NS4B
NS4B:
S
11
N
NS4B:
S
14
G
NS4B:
F
17
L
NS4B:
Q
19
H
NS4B:
R
20
K
NS4B:
I
21
P
NS4B:
V
23
T
NS4B:
K
24
R
NS4B:
N
26
T
NS4B:
F
27
T
NS4B:
S
28
L
NS4B:
M
29
G
NS4B:
G
30
V
NS4B:
T
48
A
NS4B:
T
116
A
NS4B:
I
168
V
NS4B:
M
177
V
NS4B:
L
183
M
Show more
NS5
NS5:
Q
18
H
NS5:
I
33
T
NS5:
K
45
R
NS5:
V
49
I
NS5:
I
78
V
NS5:
R
101
K
NS5:
C
139
A
NS5:
C
140
S
NS5:
I
162
V
NS5:
R
177
K
NS5:
V
181
I
NS5:
R
247
K
NS5:
Y
254
F
NS5:
R
287
K
NS5:
R
288
K
NS5:
H
296
Q
NS5:
E
298
A
NS5:
D
312
E
Show more
capsid
capsid:
S
11
N
capsid:
V
24
G
capsid:
S
100
T
capsid:
K
108
T
capsid:
T
109
A
capsid:
I
111
F
capsid:
A
112
T
capsid:
V
113
I
capsid:
M
114
L
capsid:
I
115
L
capsid:
S
120
C
capsid:
V
121
A
env
env:
T
64
S
env:
K
71
R
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
L
312
A
env:
A
369
S
env:
K
413
R
env:
V
442
I
env:
L
483
M
prM
prM:
M
44
L
prM:
D
46
E
prM:
M
112
L
prM:
V
156
A
prM:
V
157
I
Deletions
None
Insertions
ins_NS4B:31:N
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue