This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MHZ9.1

Taiwan/LOC_000MHZ9.1/2009
Y. P. Huang, T. L. Lin, L. C. Hsu, Y. J. Chen, Y. H. Tseng, C. C. Hsu, W. B. Fan, J. Y. Yang, F. Y. Chang, H. S. Wu, Y.-P. Huang, T.-L. Lin, L.-C. Hsu & H.-S. Wu

Centers for Disease Control, Department of Health, Research and Diagnostic Center

Sample details

Collection date
2009
Earliest release date
2010-10-30
Sampling location
Taiwan
Isolate name
2009-03531

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2010-10-30
NCBI update date
2010-10-30
INSDC accession

Host

Host

Submission details

Submission ID
HM622390.1
Submitting group
Date submitted
2026-09-09 16:34:09 UTC
Date released
2026-09-09 16:37:44 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
1425
Total inserted nucs
6
Total deleted nucs
2
Length
7318 (98.7%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • T51C
  • A54T
  • T67A
  • A76G
  • T88C
  • A89G
  • T99C
  • G100A
  • C106T
  • C120T
  • G121T
  • C122T
  • A124C
  • C126A
  • T138C
  • T142C
  • G143A
  • A146G
Deletions
60, 693
Insertions
ins_63:A, ins_128:CT, ins_703:G, ins_739:TC

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

2A

  • 2A:T26N
  • 2A:N57D
  • 2A:R68K
  • 2A:V82I
  • 2A:F83Y
  • 2A:E85D
  • 2A:E102A
  • 2A:S129N

2B

  • 2B:R11D
  • 2B:K29R
  • 2B:E36D
  • 2B:V47I
  • 2B:S85A
  • 2B:M95I

2C

  • 2C:N13S
  • 2C:F22S
  • 2C:K33R
  • 2C:I37V
  • 2C:K41R
  • 2C:V44A
  • 2C:N48T
  • 2C:V60I
  • 2C:S61T
  • 2C:A75V
  • 2C:I81S
  • 2C:A103V
  • 2C:R151H
  • 2C:A173T
  • 2C:V200I
  • 2C:T271S
  • 2C:N316S

3B

  • 3B:P9Q
  • 3B:I10A

3C

  • 3C:A18V
  • 3C:I36V
  • 3C:S41A
  • 3C:I54V
  • 3C:V60I
  • 3C:I86V
  • 3C:C89F
  • 3C:V93T
  • 3C:T95S
  • 3C:I109M
  • 3C:P144A
  • 3C:I158V
  • 3C:A169G
  • 3C:E182M

3D

  • 3D:M6V
  • 3D:R10K
  • 3D:T66V
  • 3D:Y106N
  • 3D:H113C
  • 3D:D132N
  • 3D:T138V
  • 3D:R140K
  • 3D:L143F
  • 3D:N154Y
  • 3D:S163R
  • 3D:D166E
  • 3D:R169K
  • 3D:E172K
  • 3D:P184S
  • 3D:P187L
  • 3D:L189M
  • 3D:L251V

VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A

VP2

  • VP2:N45D
  • VP2:T89I
  • VP2:P94Q
  • VP2:V126I
  • VP2:N143D
  • VP2:V177I

VP3

  • VP3:L6P
  • VP3:D234H
  • VP3:E237Q
  • VP3:T240S
Deletions
N/A
Insertions
N/A

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