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LOC_000MFJ7.1
Download
Download FASTA
Download metadata TSV
Spain/LOC_000MFJ7.1/2008-01-01
E. Sotelo,
J. Fernandez-Pinero,
F. Llorente,
A. Vazquez,
A. Moreno,
M. Aguero,
P. Cordioli,
A. Tenorio,
M. A. Jimenez-Clavero &
L. Herrero
Instituto de Salud Carlos III, Centro Nacional Microbiologia
Sample details
Collection date
2008
Earliest release date
2011-10-24
Sampling location
Spain
Isolate name
HU6365/08
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-22 14:37
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2011-10-24
NCBI update date
2011-10-24
INSDC accession
JF707789.1
Host
Host
mosquitos (Culex perexiguus)
Submission details
Submission ID
JF707789.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:51:33 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000MFJ7.1.embl
Alignment and QC
Total SNPs
423
Total deleted nucs
1
Length
10900 (98.8%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
Y
35
H
NS1:
A
70
S
NS1:
D
208
H
NS1:
E
289
G
NS2A:
I
142
V
NS3:
T
338
S
NS3:
A
453
I
NS4B:
A
115
T
NS4B:
E
249
D
NS5:
K
177
R
NS5:
K
194
R
NS5:
M
436
I
capsid:
M
34
V
capsid:
G
110
R
env:
A
51
T
env:
P
88
S
env:
K
93
R
env:
I
481
V
prM:
L
94
V
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
T
195
A
A
196
G
T
234
C
G
354
A
G
424
A
C
483
T
G
492
A
G
495
T
C
561
T
C
600
T
T
606
C
A
630
G
T
639
C
C
687
T
A
744
G
C
745
G
G
786
A
T
826
C
Show more
Deletions
10966
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
Y
35
H
NS1:
A
70
S
NS1:
D
208
H
NS1:
E
289
G
NS2A
NS2A:
I
142
V
NS2B
NS2B:
V
103
A
NS3
NS3:
P
249
T
NS3:
T
338
S
NS3:
T
356
I
NS3:
A
453
I
NS4A
NS4A:
A
85
V
NS4B
NS4B:
A
115
T
NS4B:
E
249
D
NS5
NS5:
K
194
R
NS5:
M
436
I
capsid
capsid:
M
34
V
capsid:
G
110
R
env
env:
A
51
T
env:
P
88
S
env:
I
126
T
env:
V
159
I
env:
L
167
F
env:
I
481
V
prM
prM:
L
94
V
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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