This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MFH9.1

USA/LOC_000MFH9.1/2003-01-01
C. C. Andrade, P. D. Maharaj, W. K. Reisen & A. C. Brault

University of Davis - California, Veterinary Medicine - Pathology, Microbiology, Immunology; Center for Vector-borne Disease

Sample details

Collection date
2003
Earliest release date
2011-07-31
Sampling location
USA
Isolate name
CA-03 IMPR116

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2011-07-31
NCBI update date
2011-10-19
INSDC accession

Host

Host

Submission details

Submission ID
JF703164.1
Submitting group
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:51:33 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
38
Total ambiguous nucs
3
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:K110N
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:G845R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • T1442C
  • C1465T
  • T1830C
  • C2466T
  • A2799T
  • C3570T
  • C4107T
  • A4146G
  • C4272T
  • T4542C
  • C4803T
  • C4827T
  • G5280A
  • T5367C
  • G5421A
  • C6138T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:K110N

NS5

  • NS5:G845R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue