This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MFBN.1

Display Name: Bosnia_and_Herzegovina/LOC_000MFBN.1/2023
E. Kniha, I. Hoxha & A. Alic

Sample details

Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Earliest release date
2025-07-31
Collection country
Bosnia and Herzegovina
Isolate name
BIH_1808

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-27 14:17insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institute of Specific Prophylaxis and Tropical Medicine, Center for Pathophysiology, Infectiology and Immunology, Medical University of Vienna, Austria

INSDC

NCBI release date
2025-07-31
NCBI update date
2025-07-31
INSDC accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
693
Total SNPs
111
Total inserted nucs
32
Total deleted nucs
99
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
6.89%
Total stop codons
0

Submission details

Submission ID
PV040771.1
Submitting group
Date submitted
2025-10-27 14:17:35 UTC
Date released
2025-10-27 14:38:45 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T10041A
  • C10138A
  • T10140A
  • T10143G
  • A10149T
  • G10152A
  • A10161G
  • C10179A
  • G10185T
  • A10190G
  • A10191G
  • C10200T
  • C10203T
  • T10209C
  • A10212T
  • A10218G
  • C10219A
  • G10224A
    • Deletions
    10045-10131, 10467-10470, 10487-10494
    Insertions
    ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10452:AGA, ins_10461:AG, ins_10483:GAT, ins_10501:T

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:E816A
  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
  • NS5:K892R
  • NS5:T898I
  • NS5:L899V
    • Deletions
    None
    Insertions
    None

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