This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MD8W.1

Display Name: Brazil/LOC_000MD8W.1/2019-06-04
S. T. de Lima, I. M. Claro, X. Hua, R. de Jesus, K. Serres, L. M. Simoes Mello, J. Forato, F. R. Moreira, R. B. Kato, G. N. Guimaraes, G. C. Scachetti, Pd. S. Andrade, L. M. Duarte, M. E. T. de Lima, C. P. Ferraz, M. P. Vianna, R. M. Santiago, E. L. Braga, I. S. Carneiro, A. Carlos L Firmino, M. G. Cabral, C. Souza, L. P. Mello, S. Li, ..., S. T. S. de Lima

Sample details

Collection date
2019-06-04
Collection date (lower bound)
2019-06-04
Collection date (upper bound)
2019-06-04
Earliest release date
2025-09-24
Collection country
Brazil
Collection subdivision level 1
Ceara, Boa Viagem
Isolate name
Equus_caballus/Brazil/2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Kentucky, Department of Microbiology, Immunology, and Molecular Genetics

INSDC

NCBI release date
2025-09-24
NCBI update date
2025-09-24
INSDC accession

Host

Host taxon id
Host name scientific
Equus caballus

Alignment and QC metrics

Length
10299
Total SNPs
55
Total inserted nucs
0
Total deleted nucs
10
Total ambiguous nucs
0
Total unknown nucs
707
Total frame shifts
0
Completeness
87.06%
Total stop codons
0

Submission details

Submission ID
PQ438738.1
Submitting group
Date submitted
2025-11-10 19:00:04 UTC
Date released
2025-11-10 19:17:48 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T247C
  • A630G
  • C1242T
  • C1308T
  • C1465T
  • T1584C
  • C1599T
  • G2022A
  • G2064A
  • T2280C
  • C2316T
  • T2832C
  • C2974T
  • C3066T
  • T3156C
  • A3201G
  • C3300T
  • T3388C
    • Deletions
    10393-10402
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:H119Y

    • NS5

  • NS5:S423N

    • env

  • env:L167F
    • Deletions
    None
    Insertions
    None

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