This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MCUQ.1

Display Name: Romania/LOC_000MCUQ.1/2017
S. Dinu, I. G. Stancu, A. I. Cotar, C. S. Ceianu, G. V. Pintilie, I. Karpathakis, E. Falcuta, O. Csutak, F. L. Prioteasa & G. V. Tiron

Sample details

Collection date
2017
Collection date (lower bound)
2017-01-01
Collection date (upper bound)
2017-12-31
Earliest release date
2024-11-05
Collection country
Romania
Isolate name
BR089/2017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-13 18:03insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Military Medical Institute for Research and Development, Molecular Epidemiology for Communicable Diseases Laboratory

INSDC

NCBI release date
2024-11-05
NCBI update date
2024-11-05
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
609
Total SNPs
124
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
5.52%
Total stop codons
0

Submission details

Submission ID
PQ124098.1
Submitting group
Date submitted
2026-02-13 18:03:28 UTC
Date released
2026-02-13 18:22:24 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C9402A
  • T9405C
  • T9408A
  • T9417C
  • C9430A
  • C9432G
  • G9435A
  • T9438G
  • T9441C
  • T9444C
  • A9447G
  • G9449A
  • C9453T
  • C9456G
  • T9465C
  • A9477G
  • G9486A
  • G9489A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R590K
  • NS5:T641G
  • NS5:T728M
  • NS5:V740I
    • Deletions
    None
    Insertions
    None

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