This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M9FL.1

Display Name: Tajikistan/LOC_000M9FL.1
S. V. Seregin, I. Y. Tumanova, O. I. Vyshemirski, I. D. Petrova, D. K. Lvov, V. L. Gromashevski, E. I. Samokhvalov, G. I. Tiunnikov, V. V. Gutorov, F. H. Tishkova, O. A. Daniyarov, S. V. Netesov, V. S. Petrov, G. I. Tyunnikov & S. S. Seregin

Submission details

Submission ID
AY297692.2.S
Submitting group
Date submitted
2025-07-03 13:43:16 UTC
Date released
2025-07-03 13:43:38 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-03 13:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
State Research Center of Virology and Biotechnology 'Vector', Biochemistry of Viruses

Alignment and QC metrics S

Completeness S
100.00%
Length S
1673
Total ambiguous nucs S
0
Total deleted nucs S
1
Total frame shifts S
0
Total inserted nucs S
2
Total SNPs S
210
Total unknown nucs S
0

Sample details

Earliest release date
2003-08-18
Collection country
Tajikistan
Collection date (upper bound)
2003-08-18
Isolate name
TAJ/HU8975

INSDC

INSDC accession S
NCBI release date
2003-08-18

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T48C
  • S:G54A
  • S:A61G
  • S:C64T
  • S:G67A
  • S:G99A
  • S:G112A
  • S:A118G
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T182C
  • S:G229A
  • S:C235T
  • S:T250A
  • S:G262A
  • S:A268C
    • Deletions
    S:1617
    Insertions
    ins_S:1612:C, ins_S:1577:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R15K
  • NP:T111I
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I
    • Deletions
    None
    Insertions
    None

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