This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M9FL.1

Display Name: Turkey/LOC_000M9FL.1/2008
Ozkul, A.; Uyar, Y.; Dincer, E.; Carhan, A.; Ozkaya, E.

Submission details

Submission ID
FJ601887.1.S
Submitting group
Date submitted
2025-05-08 15:37:02 UTC
Date released
2025-05-08 15:37:49 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-05-08 15:37insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Ankara University, Veterinary Faculty, Virology Department

Alignment and QC metrics S

Completeness S
29.01%
Length S
485
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
71
Total unknown nucs S
0

Sample details

Earliest release date
2010-02-02
Collection country
Turkey
Collection date
2008
Collection date (lower bound)
2008-01-01
Collection date (upper bound)
2008-12-31
Isolate name
KASTAMONU105-2008-1809

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession S
NCBI release date
2010-02-02

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T157C
  • S:C166T
  • S:G171A
  • S:T175G
  • S:C178A
  • S:T182C
  • S:C187T
  • S:G189A
  • S:T199C
  • S:T211C
  • S:C217G
  • S:C244T
  • S:T250G
  • S:G256A
  • S:G262A
  • S:A268C
  • S:T274C
  • S:T283C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue