This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M9FL.1

Serbia/LOC_000M9FL.1/2018-01-01
M. Suka, V. Cirkovic, M. Siljic, M. Jankovic, A. Loncar, G. Stamenkovic & M. Stanojevic

University of Belgrade, Faculty of Medicine, Institute of Microbiology and Immunology, Virology Department

Sample details

Collection date
2018
Earliest release date
2024-04-17
Sampling location
Serbia
Isolate name
SRWNV0000005/Serbia/2018

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2024-04-17
NCBI update date
2024-04-17
INSDC accession

Host

Host

Submission details

Submission ID
PP622995.1
Submitting group
Date submitted
2026-10-13 10:56:53 UTC
Date released
2026-10-13 11:12:40 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
171
Total deleted nucs
923
Length
832 (15.9%)
Amino Acid Mutations from founder clade
  • NS5:F772S
  • NS5:V790M
  • NS5:W792L
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T9204A
  • G9210A
  • G9216A
  • C9219A
  • C9222G
  • A9225G
  • A9228G
  • G9231T
  • T9234G
  • C9240T
  • C9241T
  • C9244A
  • G9245A
  • T9246G
  • T9252C
  • C9255A
  • C9258A
  • C9259A
Deletions
10000-10044, 10051-10134, 10145-10399, 10406-10748, 10757-10952
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
  • NS5:F772S
  • NS5:V790M
  • NS5:W792L
Deletions

NS5

NS5:774-788
Insertions
N/A

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