This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M9FL.1

Display Name: USA/LOC_000M9FL.1/2021
C. A. Mariskanish, T. Hallum, S. S. Lee, M. A. Conte & J. Hang

Sample details

Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Earliest release date
2024-12-23
Collection country
USA
Collection subdivision level 1
San Gabriel Valley, California

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-14 15:28insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Walter Reed Army Institute of Research, Viral Diseases Program

INSDC

NCBI release date
2024-12-23
NCBI update date
2024-12-23
INSDC accession

Host

Host taxon id
Host name scientific
Fringillidae

Alignment and QC metrics

Length
10926
Total SNPs
123
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.07%
Total stop codons
0

Submission details

Submission ID
PQ005975.1
Submitting group
Date submitted
2025-11-14 15:28:05 UTC
Date released
2025-11-14 15:46:18 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C204T
  • C340T
  • A407G
  • C435T
  • A564G
  • A630G
  • C663T
  • T861A
  • C882T
  • C933T
  • T940C
  • C966T
  • C969T
  • C1065T
  • C1089T
  • C1170T
  • A1203G
  • T1442C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I236V

    • NS2A

  • NS2A:F46L
  • NS2A:R122H
  • NS2A:R188K

    • NS2B

  • NS2B:V120I

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:M29L

    • NS5

  • NS5:V49I
  • NS5:G806R

    • capsid

  • capsid:K104R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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