This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M9FL.1

Serbia/LOC_000M9FL.1/2020-01-01
M. Suka, V. Cirkovic, M. Siljic, M. Jankovic, A. Loncar, G. Stamenkovic & M. Stanojevic

University of Belgrade, Faculty of Medicine, Institute of Microbiology and Immunology, Virology Department

Sample details

Collection date
2020
Earliest release date
2024-04-17
Sampling location
Serbia
Isolate name
SRWNV0000557/Serbia/2020

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-18 22:11insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-04-17
NCBI update date
2024-04-17
INSDC accession

Host

Host

Submission details

Submission ID
PP622996.1
Submitting group
Date submitted
2026-06-18 22:11:16 UTC
Date released
2026-06-18 22:28:51 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
180
Total deleted nucs
341
Total frame shifts
1
Frame shifts
NS5:898-905(nt:10371-10395)
Length
832 (10.6%)
Amino Acid Mutations from founder clade
  • NS5:D635N
  • NS5:I740V
  • NS5:A783G
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T9204A
  • G9210A
  • G9216A
  • C9219A
  • C9222G
  • A9225G
  • A9228G
  • G9231T
  • T9234G
  • C9241T
  • C9244A
  • G9245A
  • T9246G
  • T9252C
  • C9255A
  • C9258A
  • C9259A
  • G9260A
Deletions

10030-10370
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:D635N
  • NS5:T641G
  • NS5:A783G
Deletions

NS5

NS5:784-897
Insertions
N/A

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