This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M22K.1

USA/LOC_000M22K.1/2004-01-01
M. R. Henn, R. M. Newman, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, S. Sykes, M. Koehrsen, D. Borenstein, R. Engels, E. Freedman, M. Gellesch, E. Heilman, C. Howarth, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2004
Earliest release date
2010-07-28
Sampling location
USA (Illinois)
Isolate name
WNV-1/US/BID-V4352/2004

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-15 08:07insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-07-28
NCBI update date
2016-07-25
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HM538582.1
Submitting group
Date submitted
2026-06-15 08:07:19 UTC
Date released
2026-06-15 08:19:07 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
33
Length
10313 (93.5%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS1:Y35H
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:I402V
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C567T
  • A630G
  • C660T
  • C1158T
  • C1317T
  • T1389C
  • T1442C
  • C1465T
  • T2190C
  • C2271T
  • C2466T
  • T2572C
  • G3096T
  • T3675C
  • C4107T
  • A4146G
  • C4299T
  • C4803T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS1

  • NS1:Y35H

NS5

  • NS5:I402V

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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