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LOC_000M20P.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/LOC_000M20P.1/2012-06-08
N. Grubaugh,
Y. Fang,
N. L. Matteson,
K. Gangavarapu,
L. Coffey,
C. Barker &
K. Andersen
Sample details
Collection date
2012-06-08
Collection date (lower bound)
2012-06-08
Collection date (upper bound)
2012-06-08
Earliest release date
2019-01-20
Collection country
USA
Collection subdivision level 1
Bakersfield,California
Isolate name
WNV/bird/Bakersfield_CA_USA/2012-06-08/W328
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-01-28 14:56
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology
INSDC
NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
MH507880.1
Bioproject accession
PRJNA472981
Host
Host taxon id
142466
Host name scientific
Aphelocoma californica
Alignment and QC metrics
Length
10302
Total SNPs
66
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0
Submission details
Submission ID
MH507880.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-01-28 14:56:35 UTC
Date released
2026-01-28 15:12:49 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000M20P.1.embl
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
T
477
C
T
521
C
A
630
G
C
660
T
C
849
T
T
891
G
T
1442
C
C
1465
T
C
1533
T
C
1557
T
C
1635
T
G
1836
A
C
2466
T
C
3570
T
C
4107
T
C
4129
T
A
4146
G
C
4272
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
S
19
G
NS3
NS3:
I
162
M
env
env:
V
159
A
env:
L
167
F
prM
prM:
V
19
A
Deletions
None
Insertions
None
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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