This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1WX.1

Display Name: USA/LOC_000M1WX.1/2011-08-05
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

Sample details

Collection date
2011-08-05
Collection date (lower bound)
2011-08-05
Collection date (upper bound)
2011-08-05
Earliest release date
2019-01-20
Collection country
USA
Collection subdivision level 1
Bakersfield,California
Isolate name
WNV/bird/Bakersfield_CA_USA/2011-08-05/W323

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-28 14:56insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Aphelocoma californica

Alignment and QC metrics

Length
10302
Total SNPs
68
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
267
Total frame shifts
0
Completeness
90.99%
Total stop codons
0

Submission details

Submission ID
MH507876.1
Submitting group
Date submitted
2026-01-28 14:56:35 UTC
Date released
2026-01-28 15:12:49 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A104G
  • T477C
  • A630G
  • C660T
  • T891G
  • T1442C
  • C1465T
  • T2103C
  • A2236G
  • C2385T
  • C2466T
  • C3570T
  • C4107T
  • C4129T
  • A4146G
  • C4251A
  • C4272T
  • T4290A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS3

  • NS3:I162M

    • NS5

  • NS5:P369S
  • NS5:G805E

    • capsid

  • capsid:K3R

    • env

  • env:V159A
  • env:L167F
  • env:T424A
    • Deletions
    None
    Insertions
    None

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