This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1VZ.1

USA/LOC_000M1VZ.1/2017-07-04
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-07-04
Earliest release date
2019-01-20
Sampling location
USA (Bakersfield,California)
Isolate name
WNV/bird/Bakersfield_CA_USA/2017-07-04/W342

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-25 21:18insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
MH507889.1
Submitting group
Date submitted
2026-02-25 21:17:49 UTC
Date released
2026-02-25 21:34:32 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
90
Total unknown nucs
91
Length
10302 (92.6%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G177A
  • C292T
  • A314G
  • C474T
  • A630G
  • C660T
  • C762T
  • T1442C
  • C1465T
  • A1527G
  • T1659C
  • T1980C
  • C1986A
  • C2080T
  • A2205G
  • T2259C
  • C2448T
  • C2466T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS2A

  • NS2A:N214S

    • NS4B

  • NS4B:F119L

    • NS5

  • NS5:T25N

    • capsid

  • capsid:N73S

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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