This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1VZ.1

USA/LOC_000M1VZ.1/2007
A. R. McMullen, F. J. May, L. Li, H. Guzman, R. Jr. Bueno, J. A. Dennett, R. B. Tesh, A. D. Barrett & A. D. T. Barrett

University of Texas Medical Branch

Sample details

Collection date
2007
Earliest release date
2011-07-14
Sampling location
USA (Texas)
Isolate name
M19433

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-23 00:20insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2011-07-14
NCBI update date
2011-07-14
INSDC accession

Host

Host

Submission details

Submission ID
JF415919.1
Submitting group
Date submitted
2026-02-23 00:19:23 UTC
Date released
2026-02-23 00:28:20 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
57
Length
11029 (100%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A459G
  • A630G
  • C660T
  • A831G
  • G1116A
  • A1320G
  • T1442C
  • C1465T
  • C1974T
  • C2034A
  • G2361A
  • C2466T
  • T2877C
  • C2961T
  • T3117C
  • T3399C
  • C3474T
  • C4000T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:S160A

    • NS4A

  • NS4A:A85T

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:M91V
  • NS5:K314R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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