This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1U1.1

Display Name: USA/LOC_000M1U1.1/2023-08-07
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2023-08-07
Collection date (lower bound)
2023-08-07
Collection date (upper bound)
2023-08-07
Earliest release date
2025-09-04
Collection country
USA
Collection subdivision level 1
Nebraska; Scotts Bluff
Isolate name
UNMC0543

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-12 18:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex

Alignment and QC metrics

Length
10260
Total SNPs
114
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.03%
Total stop codons
0

Submission details

Submission ID
OZ310223.1
Submitting group
Date submitted
2025-11-12 18:19:25 UTC
Date released
2025-11-12 18:36:27 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C600T
  • A630G
  • G636T
  • C720T
  • T946C
  • T1206C
  • C1386A
  • A1401G
  • G1416T
  • T1442C
  • C1465T
  • C1626T
  • C1629T
  • A1701G
  • T1881C
  • C1900T
  • T1902A
  • T1965C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:L241M

    • NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:D312E

    • env

  • env:E150D
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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