This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1U1.1

Display Name: USA/LOC_000M1U1.1/2018-07-31
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2018-07-31
Collection date (lower bound)
2018-07-31
Collection date (upper bound)
2018-07-31
Earliest release date
2025-09-04
Collection country
USA
Collection subdivision level 1
Nebraska; Douglas
Isolate name
UNMC0321

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-04 14:36insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10275
Total SNPs
86
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.16%
Total stop codons
0

Submission details

Submission ID
OZ310226.1
Submitting group
Date submitted
2025-11-04 14:36:05 UTC
Date released
2025-11-04 15:01:01 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • A432G
  • C435T
  • A630G
  • C1047T
  • T1107C
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2109T
  • C2304T
  • T2412C
  • C2466T
  • T2616C
  • C2913T
  • T3156C
  • C3501T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:L95F
  • NS2A:R188K

    • NS3

  • NS3:T356S

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:I33T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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