This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1T3.1

Display Name: China/LOC_000M1T3.1/2018
J. Xie, X. Yang, S. Hu, W. Zhan, C. Zhang, H. Liu, H. Zhao, H. Chai, K. Chen, Q. Du, P. Liu, A. Yin & M. Luo

Sample details

Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Earliest release date
2020-03-21
Collection country
China
Isolate name
CVA-16/08/CHN/GZ/2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-03 10:55insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Guangdong Women and Children Hospital, Medical Genetic Centre

INSDC

NCBI release date
2020-03-21
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
891
Total SNPs CV-A16
216
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
511
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
18.91%

Submission details

Submission ID
MT119434.1.CV-A16
Submitting group
Date submitted
2025-11-03 10:54:57 UTC
Date released
2025-11-03 11:34:48 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • G2452C
  • G2453C
  • A2454T
  • C2463T
  • G2475A
  • G2476A
  • C2481G
  • C2483A
  • T2484C
  • T2485A
  • C2486G
  • C2487T
  • G2489A
  • T2493G
  • G2494A
  • G2495A
  • T2496C
    • Deletions
    3331-3841
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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