This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1R7.1

Display Name: USA/LOC_000M1R7.1/2016-08-26
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2016-08-26
Collection date (lower bound)
2016-08-26
Collection date (upper bound)
2016-08-26
Earliest release date
2025-09-04
Collection country
USA
Collection subdivision level 1
Nebraska; Chase
Isolate name
UNMC0277

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-18 12:46insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-09-10
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10276
Total SNPs
83
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.17%
Total stop codons
0

Submission details

Submission ID
OZ310179.1
Submitting group
Date submitted
2025-10-18 12:46:08 UTC
Date released
2025-10-18 13:02:06 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C204T
  • C340T
  • A407G
  • C435T
  • A630G
  • C969T
  • C1170T
  • T1442C
  • C1465T
  • G1662A
  • C1707T
  • C1750T
  • G1876A
  • G2004A
  • C2304T
  • C2466T
  • A3175G
  • C3450T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I236V

    • NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:K96R
  • NS2B:M99T

    • NS5

  • NS5:K314R

    • capsid

  • capsid:K104R

    • env

  • env:V159A
  • env:L167F
  • env:V304I
    • Deletions
    None
    Insertions
    None

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