This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1R7.1

Display Name: Italy/LOC_000M1R7.1/2023-08-09
G. Savini, F. Monaco, L. Teodori, G. Amatori, M. Marcacci & F. Valleriani

Sample details

Collection date
2023-08-09
Collection date (lower bound)
2023-08-09
Collection date (upper bound)
2023-08-09
Earliest release date
2024-02-02
Collection country
Italy
Collection subdivision level 1
Veneto
Isolate name
TE.25159.1.2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Istituto Zooprofilattico Sperimentale 'G. Caporale', Viral Foreign Deseases of Animals

INSDC

NCBI release date
2024-02-02
NCBI update date
2024-02-02
INSDC accession

Host

Host taxon id
Host name scientific
Corvidae

Alignment and QC metrics

Length
10961
Total SNPs
492
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
1
Total unknown nucs
0
Total frame shifts
0
Completeness
99.37%
Total stop codons
0

Submission details

Submission ID
PP104382.1
Submitting group
Date submitted
2025-09-12 15:10:02 UTC
Date released
2025-09-12 15:26:32 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A156T
  • G168A
  • T195A
  • C210T
  • G219A
  • T234C
  • C282T
  • G354A
  • G447T
  • T477C
  • C483T
  • G492A
  • G495T
  • T510C
  • C561T
  • C600T
  • T606C
  • A630G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:A70S

    • NS2A

  • NS2A:R122H

    • NS2B

  • NS2B:I97M
  • NS2B:V103A

    • NS3

  • NS3:T356I

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:K432R

    • env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

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