This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1PB.1

Display Name: USA/LOC_000M1PB.1/2022-09-12
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2022-09-12
Collection date (lower bound)
2022-09-12
Collection date (upper bound)
2022-09-12
Earliest release date
2025-09-04
Collection country
USA
Collection subdivision level 1
Nebraska; Hall
Isolate name
UNMC0017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-04 14:36insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex

Alignment and QC metrics

Length
10280
Total SNPs
105
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.21%
Total stop codons
0

Submission details

Submission ID
OZ310221.1
Submitting group
Date submitted
2025-11-04 14:36:05 UTC
Date released
2025-11-04 15:01:01 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • T468C
  • A630G
  • T774C
  • G792A
  • A981T
  • T1092C
  • A1362G
  • G1440A
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1881C
  • C2304T
  • A2310C
  • C2466T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I236V

    • NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I26V

    • NS3

  • NS3:S421N

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:R26K

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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