This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1PB.1

Display Name: USA/LOC_000M1PB.1/2023-09-13
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2023-09-13
Collection date (lower bound)
2023-09-13
Collection date (upper bound)
2023-09-13
Earliest release date
2025-09-04
Collection country
USA
Collection subdivision level 1
Nebraska; Wayne
Isolate name
UNMC0728

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-09-10
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10260
Total SNPs
88
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.03%
Total stop codons
0

Submission details

Submission ID
OZ310177.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:43:38 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G237A
  • C435T
  • A507G
  • T629C
  • A630G
  • C732T
  • G1117A
  • C1122T
  • C1242T
  • T1442C
  • C1465T
  • C1560T
  • C1671T
  • A1698G
  • C1953T
  • C2218T
  • C2466T
  • T3138C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:L95F

    • NS3

  • NS3:E180D
  • NS3:T356I
  • NS3:I435L

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:S15N
  • NS4B:I240M

    • env

  • env:A51T
  • env:V159A
  • env:L167F

    • prM

  • prM:V55A
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue