This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1MF.1

Display Name: China/LOC_000M1MF.1/2018
J. Xie, X. Yang, S. Hu, W. Zhan, C. Zhang, H. Liu, H. Zhao, H. Chai, K. Chen, Q. Du, P. Liu, A. Yin & M. Luo

Sample details

Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Earliest release date
2020-03-21
Collection country
China
Isolate name
CVA-10/13/CHN/GZ/2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-29 20:47insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Guangdong Women and Children Hospital, Medical Genetic Centre

INSDC

NCBI release date
2020-03-21
INSDC accession CV-A10

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A10

Length CV-A10
894
Total SNPs CV-A10
214
Total inserted nucs CV-A10
0
Total deleted nucs CV-A10
0
Total ambiguous nucs CV-A10
0
Total unknown nucs CV-A10
0
Total frame shifts CV-A10
0
Completeness CV-A10
12.07%

Submission details

Submission ID
MT119415.1.CV-A10
Submitting group
Date submitted
2025-10-29 20:46:53 UTC
Date released
2025-10-29 21:25:13 UTC

Clade

Clade CV-A10
C

Genotype

Genotype
CV-A10

Files

Annotations

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • C2439T
  • C2445T
  • G2451A
  • C2454T
  • C2457A
  • C2463T
  • T2470C
  • A2473G
  • C2475A
  • C2478T
  • T2481A
  • T2483C
  • G2487C
  • C2488A
  • C2493T
  • A2496T
  • A2497G
  • C2498G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the AY421767.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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