This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M1KK.1

Display Name: USA/LOC_000M1KK.1/2016-08-25
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2016-08-25
Collection date (lower bound)
2016-08-25
Collection date (upper bound)
2016-08-25
Earliest release date
2025-09-04
Collection country
USA
Collection subdivision level 1
Nebraska; Douglas
Isolate name
UNMC0272

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-22 14:38insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-09-10
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10243
Total SNPs
78
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
11
Total frame shifts
0
Completeness
92.77%
Total stop codons
0

Submission details

Submission ID
OZ310217.1
Submitting group
Date submitted
2025-10-22 14:38:03 UTC
Date released
2025-10-22 14:55:18 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A621G
  • A630G
  • T639A
  • T945A
  • C1047T
  • C1227T
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1881C
  • C2109T
  • C2304T
  • C2466T
  • C2692T
  • C3324T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R122H
  • NS2A:R188K
  • NS2A:A219V

    • NS4B

  • NS4B:I240M

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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