This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M16C.1

USA/LOC_000M16C.1/2023-08-11
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2023-08-11
Earliest release date
2025-09-04
Sampling location
USA (Nebraska; Platte)
Isolate name
UNMC0578

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-16 22:14insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310175.1
Submitting group
Date submitted
2026-02-16 22:13:50 UTC
Date released
2026-02-16 22:46:36 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
103
Total unknown nucs
70
Length
9210 (82.9%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • A360C
  • A418G
  • C435T
  • C450T
  • G504A
  • T606C
  • A630G
  • G741A
  • C775T
  • T826C
  • T928C
  • G1002A
  • T1442C
  • C1465T
  • T1611C
  • A1657G
  • G1662A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS3

  • NS3:I162M

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:M235V

    • capsid

  • capsid:K108E

    • env

  • env:V159A
  • env:L167F
  • env:T231A

    • prM

  • prM:F155L
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue