This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M13J.1

Display Name: USA/LOC_000M13J.1/2012-07-26
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2012-07-26
Collection date (lower bound)
2012-07-26
Collection date (upper bound)
2012-07-26
Earliest release date
2025-09-03
Collection country
USA
Collection subdivision level 1
Nebraska; Madison
Isolate name
UNMC0040

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 19:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-03
NCBI update date
2025-09-04
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10260
Total SNPs
64
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.03%
Total stop codons
0

Submission details

Submission ID
OZ310157.1
Submitting group
Date submitted
2025-09-16 19:40:03 UTC
Date released
2025-09-16 19:56:08 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • G451A
  • A630G
  • C1335T
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • G2058A
  • C2109T
  • C2304T
  • C2466T
  • T2475C
  • C3501T
  • T3528C
  • G3697A
  • C3912T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:V58I
  • NS2A:R188K

    • NS4B

  • NS4B:I240M

    • capsid

  • capsid:A119T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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