This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0V0.1

USA/LOC_000M0V0.1/2001-01-01
M. R. Henn, R. M. Newman, D. Young, A. Ciota, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, S. Sykes, M. Koehrsen, D. Borenstein, R. Engels, E. Freedman, M. Gellesch, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2001
Earliest release date
2010-07-28
Sampling location
USA (New York)
Isolate name
WNV-1/US/BID-V4694/2001

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-07-28
NCBI update date
2010-07-28
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HM488248.1
Submitting group
Date submitted
2026-05-22 14:37:36 UTC
Date released
2026-05-22 14:50:28 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
22
Length
10608 (96.2%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:A224T
  • NS2B:A103V
  • NS3:I204T
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:G104E
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159V
  • env:L178Q
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C1465T
  • T1499A
  • C1974T
  • T3180C
  • C4107T
  • G4195A
  • A4257G
  • C5148T
  • T5222C
  • G5280A
  • C6069T
  • T6405C
  • G7226A
  • G7797A
  • T8235C
  • C8808T
  • A8958G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:A224T

NS3

  • NS3:I204T

NS4B

  • NS4B:G104E

env

  • env:L167F
  • env:L178Q
Deletions
N/A
Insertions
N/A

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