This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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West Nile Virus
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LOC_000M0V0.1
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Download FASTA
Download metadata TSV
Display Name: Italy/LOC_000M0V0.1/2023-08-11
F. Monaco,
F. Valleriani,
L. Teodori,
G. Amatori,
M. Marcacci &
G. Savini
Sample details
Collection date
2023-08-11
Collection date (lower bound)
2023-08-11
Collection date (upper bound)
2023-08-11
Earliest release date
2024-02-02
Collection country
Italy
Collection subdivision level 1
EmiliaRomagna
Isolate name
TE.21954.1.1
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-12 15:10
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Istituto Zooprofilattico Sperimentale 'G. Caporale', Viral Foreign Deseases of Animals
INSDC
NCBI release date
2024-02-02
NCBI update date
2024-02-02
INSDC accession
PP104352.1
Host
Host taxon id
7175
Host name scientific
Culex pipiens
Alignment and QC metrics
Length
10919
Total SNPs
2212
Total inserted nucs
17
Total deleted nucs
30
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
NS2A:122-124(nt:3889-3895)
Completeness
99.12%
Total stop codons
0
Submission details
Submission ID
PP104352.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-12 15:10:02 UTC
Date released
2025-09-12 15:26:32 UTC
Lineage
Lineage
2
Files
Annotations
LOC_000M0V0.1.embl
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
52
T
C
123
T
G
126
A
G
128
A
A
156
T
T
167
G
G
168
A
T
180
A
T
199
C
C
204
T
C
210
T
C
216
A
G
219
A
G
222
C
A
231
T
T
234
C
C
246
T
C
255
T
Show more
Deletions
3885-3888, 6994-6996, 10447-10449, 10457-10462, 10467-10470, 10487-10494, 10904, 10921
Insertions
ins_3895:AATG, ins_7006:TTGAGA, ins_10426:AAT, ins_10483:GTT, ins_10501:T
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
M
15
L
NS1
NS1:
S
9
G
NS1:
Y
34
F
NS1:
Y
35
H
NS1:
K
44
R
NS1:
K
51
A
NS1:
V
71
I
NS1:
E
94
N
NS1:
S
99
A
NS1:
T
105
A
NS1:
I
113
M
NS1:
L
123
I
NS1:
V
135
I
NS1:
K
141
E
NS1:
Q
146
A
NS1:
L
153
M
NS1:
K
170
R
NS1:
V
171
I
NS1:
S
174
T
Show more
NS2A
NS2A:
M
34
I
NS2A:
L
38
M
NS2A:
I
39
L
NS2A:
F
46
L
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
L
126
S
NS2A:
I
129
V
NS2A:
A
137
S
NS2A:
T
147
S
NS2A:
T
150
N
NS2A:
R
167
K
NS2A:
I
183
V
NS2A:
R
188
K
NS2A:
S
192
C
Show more
NS2B
NS2B:
A
41
V
NS2B:
S
61
T
NS2B:
M
88
I
NS2B:
V
103
A
NS2B:
V
120
I
NS3
NS3:
K
11
R
NS3:
Q
92
H
NS3:
F
130
Y
NS3:
D
172
E
NS3:
I
175
A
NS3:
R
203
K
NS3:
R
215
K
NS3:
A
233
S
NS3:
P
249
H
NS3:
N
253
S
NS3:
V
283
I
NS3:
S
302
A
NS3:
S
331
A
NS3:
L
336
M
NS3:
S
347
T
NS3:
T
356
V
NS3:
V
384
I
NS3:
T
436
E
Show more
NS4A
NS4A:
I
6
V
NS4A:
K
11
R
NS4A:
T
64
S
NS4A:
M
65
L
NS4A:
A
85
V
NS4A:
V
86
I
NS4A:
V
89
A
NS4B
NS4B:
S
11
N
NS4B:
F
17
L
NS4B:
Q
19
H
NS4B:
R
20
K
NS4B:
I
21
P
NS4B:
V
23
T
NS4B:
K
24
R
NS4B:
N
26
T
NS4B:
F
27
T
NS4B:
S
28
L
NS4B:
M
29
G
NS4B:
G
30
V
NS4B:
T
116
A
NS4B:
I
168
V
NS4B:
L
180
M
NS4B:
L
183
M
NS4B:
K
193
R
NS4B:
I
202
T
NS5
NS5:
Q
18
H
NS5:
I
33
T
NS5:
K
45
R
NS5:
V
49
I
NS5:
I
78
V
NS5:
R
101
K
NS5:
C
139
A
NS5:
C
140
S
NS5:
I
162
V
NS5:
R
177
K
NS5:
V
181
I
NS5:
K
190
R
NS5:
L
197
T
NS5:
R
224
H
NS5:
V
229
I
NS5:
R
247
K
NS5:
Y
254
F
NS5:
R
287
K
Show more
capsid
capsid:
S
11
N
capsid:
V
24
G
capsid:
S
100
T
capsid:
K
108
I
capsid:
T
109
A
capsid:
I
111
F
capsid:
A
112
T
capsid:
V
113
I
capsid:
M
114
L
capsid:
I
115
L
capsid:
S
120
C
capsid:
V
121
A
env
env:
A
51
T
env:
E
55
D
env:
T
64
S
env:
K
71
R
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
V
159
T
env:
L
167
F
env:
A
172
S
env:
N
199
S
env:
T
205
S
env:
T
208
A
env:
T
210
S
Show more
prM
prM:
M
44
L
prM:
D
46
E
prM:
S
57
A
prM:
A
73
S
prM:
M
112
L
prM:
V
156
A
prM:
V
157
I
Deletions
NS2A:121
Insertions
ins_NS4B:31:N
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