This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0S6.1

USA/UNMC0299/2017-08-02
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2017-08-02
Earliest release date
2025-09-04
Sampling location
USA (Nebraska; Lincoln)
Isolate name
UNMC0299

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-20 13:10insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-04
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ310174.1
Submitting group
Date submitted
2026-03-20 13:09:48 UTC
Date released
2026-03-20 13:52:42 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
86
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • capsid:T109I
  • env:K93R
  • env:V96M
  • env:T126I
  • env:I159A
  • env:S276G
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • T348C
  • C422T
  • C435T
  • A630G
  • G1252A
  • T1442C
  • C1465T
  • C1473T
  • G1596T
  • G1662A
  • G1668A
  • G1713A
  • C1750T
  • A1792G
  • T1971C
  • C2109T
  • C2304T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS4B

  • NS4B:I240M

capsid

  • capsid:T109I

env

  • env:V96M
  • env:V159A
  • env:L167F
  • env:S276G
Deletions
N/A
Insertions
N/A

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