LOC_000M0GT.1

USA/LOC_000M0GT.1/2003-01-01

P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date

2003

Earliest release date

2010-07-28

Sampling location

USA (Connecticut)

Isolate name

WNV-1/US/BID-V4581/2003

Data use terms

Changed	User	Data use terms
2026-05-12 21:23	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2010-07-28

NCBI update date

2011-08-08

INSDC accession

HM488217.1

BioProject accession

PRJNA31237

Host

mosquitos (Culex salinarius)

Submission details

Submission ID

HM488217.1

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-12 21:23:02 UTC

Date released

2026-05-12 21:38:23 UTC

Lineage

Files

Annotations

LOC_000M0GT.1.embl

Alignment and QC

Total SNPs

Total deleted nucs

Length

10467 (94.9%)

Amino Acid Mutations from founder clade

2K:L15M
NS2B:A103V
NS3:T249P
NS3:I356T
NS4A:V85A
NS4B:M29I
NS5:K177R
capsid:A52T
env:K93R
env:T126I
env:I159A
env:K179E
prM:V22A

Variant

False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

G250A
T530C
A630G
C660T
T1442C
C1465T
A1501G
A1698G
G2121A
C2466T
G2937A
G3507A
C4107T
A4146G
C4803T
G5280A
G5868A
C6138T

Deletions

10441

Insertions

N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference