LOC_000M0GT.1

USA/LOC_000M0GT.1/2003-01-01

P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date

2003

Earliest release date

2010-07-28

Sampling location

USA (Connecticut)

Isolate name

WNV-1/US/BID-V4700/2003

Data use terms

Changed	User	Data use terms
2026-05-22 14:37	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2010-07-28

NCBI update date

2011-08-11

INSDC accession

HM488236.1

BioProject accession

PRJNA31237

Host

mosquitos (Culiseta melanura)

Submission details

Submission ID

HM488236.1

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-22 14:37:36 UTC

Date released

2026-05-22 14:50:28 UTC

Lineage

Files

Annotations

LOC_000M0GT.1.embl

Alignment and QC

Total SNPs

Total inserted nucs

Total deleted nucs

193

Length

10843 (99.9%)

Amino Acid Mutations from founder clade

2K:L15M
NS2B:A103I
NS3:T249P
NS3:I356T
NS3:H559Y
NS4A:A58S
NS4A:V85A
NS4B:A83S
NS5:K177R
env:K93R
env:T126I
env:I159A

Variant

True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

A630G
T1442C
C1465T
T2832C
G3660T
C4107T
A4146G
G4525A
T4564C
G5280A
A6087G
C6138T
G6279A
C6286T
T6405C
C6426T
T6564C
G6640T

Deletions

10663-10666, 10674-10682, 10686-10689, 10693-10695, 10699-10722, 10731-10755, 10761-10778, 10795-10797, 10806-10816, 10828-10830, 10851, 10852, 10877, 10878, 10884-10892, 10899-10950, 10968-10972, 10977, 10997-11014

Insertions

ins_10651:TC, ins_10822:GT, ins_10858:A, ins_10873:CCGTCTC, ins_10963:CA, ins_11029:TG

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference