LOC_000M0GT.1

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USA/LOC_000M0GT.1/2003-01-01

P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date

2003

Earliest release date

2010-08-14

Sampling location

USA (Connecticut)

Isolate name

WNV-1/US/BID-V4561/2003

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2010-08-14

NCBI update date

2011-08-08

INSDC accession

HM488172.1

BioProject accession

PRJNA31237

Host

mosquitos (Ochlerotatus sticticus)

Submission details

Submission ID

HM488172.1

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-11-04 12:14:56 UTC

Date released

2026-11-04 12:26:04 UTC

Lineage

Files

Annotations

LOC_000M0GT.1.embl

Alignment and QC

Total SNPs

Total inserted nucs

Total deleted nucs

182

Length

10887 (99.8%)

Amino Acid Mutations from founder clade

2K:L15M
NS2B:A103V
NS3:T249P
NS3:I356T
NS4A:E22Q
NS4A:V85A
NS5:K177R
env:K93R
env:T126I
env:I159A

Variant

True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

T3A
A4G
C210T
T234C
T429C
A630G
C660T
C693T
T1071C
T1442C
C1465T
C2466T
C4107T
A4146G
C4518T
C4803T
G5280A
C5478T

Deletions

10676-10699, 10714-10722, 10731-10755, 10761-10778, 10786, 10793-10796, 10801-10821, 10827-10831, 10846-10851, 10859-10862, 10878-10891, 10898-10901, 10942-10959, 10965, 10973-11000

Insertions

ins_0:CCTATCCCCTGTGTGCCTTGCCTATCCCCTGTTGCGTGTCTC, ins_10661:GCGAAGTGAT, ins_10836:ATC, ins_10840:TAA

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference