This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0GT.1

USA/LOC_000M0GT.1/2008-01-01
P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2008
Earliest release date
2010-08-14
Sampling location
USA (Connecticut)
Isolate name
WNV-1/US/BID-V4366/2008

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2010-08-14
NCBI update date
2011-08-08
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HM488170.1
Submitting group
Date submitted
2026-11-05 10:26:37 UTC
Date released
2026-11-05 10:37:29 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
41
Length
10620 (96.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:A29S
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T513A
  • G550T
  • T609C
  • A630G
  • C816T
  • T1442C
  • C1465T
  • C1629T
  • C2223T
  • C2323T
  • C2466T
  • T2475C
  • C3381T
  • C3654T
  • C4047T
  • C4107T
  • A4146G
  • A4236G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS4B

  • NS4B:I240M

env

  • env:V159A
  • env:L167F

prM

  • prM:A29S
Deletions
N/A
Insertions
N/A

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