This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0GT.1

Czech_Republic/LOC_000M0GT.1/2017-09-01
Z. Hubalek, M. Kosina, I. Rudolf, J. Mendel, P. Strakova & M. Tomesek

Institute of Vertebrate Biology, Molecular Genetics Laboratory

Sample details

Collection date
2017-09
Earliest release date
2018-08-12
Sampling location
Czech Republic
Isolate name
goshawk 2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-04 12:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-08-12
NCBI update date
2018-08-12
INSDC accession

Host

Host

Submission details

Submission ID
MH377402.1
Submitting group
Date submitted
2026-06-04 12:51:51 UTC
Date released
2026-06-04 13:11:27 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
111
Total inserted nucs
33
Total deleted nucs
13
Length
745 (6.57%)
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G10101A
  • A10110G
  • G10116A
  • T10123C
  • G10125C
  • A10127C
  • G10128A
  • C10138A
  • T10140A
  • T10143G
  • A10149T
  • A10161G
  • C10179A
  • G10185T
  • A10190G
  • A10191G
  • C10200T
  • C10203T
Deletions

10421, 10467-10470, 10487-10494
Insertions

ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTAT, ins_10427:G, ins_10452:AGA, ins_10461:AG, ins_10483:GTT, ins_10501:T

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:E816A
  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
  • NS5:K892R
  • NS5:T898I
  • NS5:L899V
Deletions
N/A
Insertions
N/A

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