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LOC_000M0GT.1
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USA/LOC_000M0GT.1/2012-10-29
N. Grubaugh,
S. Grewal,
N. L. Matteson,
K. Gangavarapu,
N. Gurfield &
K. Andersen
The Scripps Research Institute, Department of Immunology and Microbiology
Sample details
Collection date
2012-10-29
Earliest release date
2019-01-20
Sampling location
USA (San_Diego,California)
Isolate name
WNV/bird/San_Diego_CA_USA/2012-10-29/W005
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
MH507612.1
BioProject accession
PRJNA472981
Host
Host
American crow (Corvus brachyrhynchos)
Submission details
Submission ID
MH507612.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-21 15:35:32 UTC
Date released
2026-07-21 15:54:11 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000M0GT.1.embl
Alignment and QC
Total SNPs
71
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS2A:
I
37
L
NS2A:
H
119
Y
NS2B:
A
103
V
NS3:
D
141
N
NS3:
T
249
P
NS3:
I
356
T
NS4A:
V
85
T
NS4B:
A
83
T
NS4B:
V
89
I
NS4B:
V
91
I
NS5:
K
177
R
NS5:
D
881
E
capsid:
S
2
F
env:
V
24
I
env:
K
93
R
env:
T
126
I
env:
I
159
A
env:
V
431
I
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
101
T
A
459
G
T
513
C
A
630
G
C
660
T
C
720
T
G
1036
A
T
1107
C
T
1442
C
C
1465
T
C
1470
T
C
2223
T
G
2257
A
C
2466
T
C
3414
T
C
3453
T
A
3495
G
C
3570
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS2A
NS2A:
I
37
L
NS2A:
H
119
Y
NS3
NS3:
D
141
N
NS4A
NS4A:
A
85
T
NS4B
NS4B:
A
83
T
NS4B:
V
89
I
NS4B:
V
91
I
NS5
NS5:
D
881
E
capsid
capsid:
S
2
F
env
env:
V
24
I
env:
V
159
A
env:
L
167
F
env:
V
431
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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