LOC_000M0GT.1

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USA/LOC_000M0GT.1/2003-01-01

P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date

2003

Earliest release date

2010-08-14

Sampling location

USA (Connecticut)

Isolate name

WNV-1/US/BID-V4569/2003

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2010-08-14

NCBI update date

2011-08-08

INSDC accession

HM488175.1

BioProject accession

PRJNA31237

Host

mosquitos (Culex restuans)

Submission details

Submission ID

HM488175.1

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-08-19 19:22:32 UTC

Date released

2026-08-19 19:38:27 UTC

Lineage

Files

Annotations

LOC_000M0GT.1.embl

Alignment and QC

Total SNPs

Total inserted nucs

Total deleted nucs

361

Length

10707 (100%)

Amino Acid Mutations from founder clade

2K:L15M
NS2A:A224T
NS2B:A103V
NS3:T249P
NS3:I356T
NS4A:V85A
NS5:L71F
NS5:K177R
NS5:V885A
capsid:A60S
env:K93R
env:T126I
env:I159V
env:L178Q

Variant

True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

A1G
G274T
A630G
C1465T
T1499A
C1974T
C3969T
C4107T
G4195A
A4257G
G5280A
T6405C
C6675T
C6735T
C7416T
G7797A
C7891T
C8052T

Deletions

10624-10696, 10701-10757, 10763-10919, 10925-10937, 10951-10975, 10983-11002, 11007-11022

Insertions

ins_0:CCTATCCCCTGTGTGCCTTGCCTATCCCCTGTTGCGTGTCTCA

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference