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LOC_000M0GT.1
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Download FASTA
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USA/UNMC0699/2023-08-22
S. Jr. Freed,
S. Chandler,
S. Uhm,
D. Gurung,
A. Butz,
K. Herzog &
J. R. Fauver
University of Nebraska Medical Center, Omaha, Nebraska
Sample details
Collection date
2023-08-22
Earliest release date
2025-09-03
Sampling location
USA (Nebraska; Dawson)
Isolate name
UNMC0699
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-04 16:50
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-09-03
NCBI update date
2025-10-21
INSDC accession
OZ310136.1
BioProject accession
PRJEB96341
BioSample accession
SAMEA119799546
Host
Host
mosquitos (Culex tarsalis)
Submission details
Submission ID
OZ310136.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-04 16:50:25 UTC
Date released
2026-06-04 17:13:09 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000M0GT.1.embl
Alignment and QC
Total SNPs
103
Length
10260 (93%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS2A:
T
52
I
NS2A:
L
95
F
NS2A:
H
119
Y
NS2B:
A
103
V
NS3:
T
249
P
NS3:
S
334
T
NS3:
I
356
T
NS3:
S
454
N
NS4A:
V
85
A
NS4B:
S
14
I
NS4B:
M
29
V
NS5:
I
162
L
NS5:
K
177
R
NS5:
R
422
K
capsid:
R
70
K
capsid:
M
114
I
env:
T
126
I
env:
I
159
A
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
G
305
A
G
438
A
C
445
T
C
522
G
A
630
G
G
1244
A
C
1281
T
T
1368
C
A
1401
G
T
1442
C
C
1465
T
T
1965
C
A
2097
C
C
2371
T
C
2466
T
C
2593
T
G
2901
A
T
2952
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS2A
NS2A:
T
52
I
NS2A:
L
95
F
NS2A:
H
119
Y
NS3
NS3:
S
334
T
NS3:
S
454
N
NS4B
NS4B:
S
14
I
NS4B:
M
29
V
NS5
NS5:
I
162
L
NS5:
R
422
K
capsid
capsid:
R
70
K
capsid:
M
114
I
env
env:
R
93
K
env:
V
159
A
env:
L
167
F
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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