This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M0GT.1

USA/LOC_000M0GT.1/2014-10-28
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2014-10-28
Earliest release date
2019-01-20
Sampling location
USA (San_Diego,California)
Isolate name
WNV/bird/San_Diego_CA_USA/2014-10-28/W012

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-02 10:59insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH507619.1
Submitting group
Date submitted
2026-06-02 10:59:05 UTC
Date released
2026-06-02 11:18:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
69
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:V9M
  • 2K:L15M
  • NS1:L206F
  • NS2A:M80I
  • NS2B:A103V
  • NS3:T249P
  • NS3:N253T
  • NS3:I356T
  • NS3:S448T
  • NS4A:V85T
  • NS4A:P100S
  • NS4B:V23A
  • NS4B:T241A
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A288G
  • A555G
  • A630G
  • C660T
  • A1320G
  • T1407C
  • C1434T
  • T1442C
  • C1465T
  • G1806A
  • C1974T
  • C2466T
  • G2886A
  • C3085T
  • T3399C
  • C3414T
  • T3684C
  • G3765A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:V9M

NS1

  • NS1:L206F

NS2A

  • NS2A:M80I

NS3

  • NS3:N253T
  • NS3:S448T

NS4A

  • NS4A:A85T
  • NS4A:P100S

NS4B

  • NS4B:V23A
  • NS4B:T241A

NS5

  • NS5:K314R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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