This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M097.1

USA/LOC_000M097.1/2008-01-01
M. R. Henn, R. M. Newman, D. Young, A. Ciota, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, S. Sykes, M. Koehrsen, D. Borenstein, R. Engels, E. Freedman, M. Gellesch, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2008
Earliest release date
2010-07-28
Sampling location
USA (New York)
Isolate name
WNV-1/US/BID-V4098/2008

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-25 13:21insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-07-28
NCBI update date
2010-07-28
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HM488204.1
Submitting group
Date submitted
2026-06-25 13:20:47 UTC
Date released
2026-06-25 13:35:19 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
43
Length
10617 (96.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:K80R
  • NS2B:A103V
  • NS3:G178V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C204T
  • A630G
  • C660T
  • T1143C
  • T1442C
  • C1465T
  • C1557T
  • C1803T
  • C1926T
  • C2466T
  • A2708G
  • T3351C
  • C3654T
  • G4008T
  • T4060C
  • C4107T
  • C4132T
  • A4146G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:K80R

NS3

  • NS3:G178V

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue