This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M05F.1

USA/UNMC0046/2012-07-26
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2012-07-26
Earliest release date
2025-09-03
Sampling location
USA (Nebraska; Madison)
Isolate name
UNMC0046

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-20 13:48insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-03
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ310139.1
Submitting group
Date submitted
2026-04-20 13:48:35 UTC
Date released
2026-04-20 14:20:20 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
75
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I308V
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:H87L
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS5:K29T
  • NS5:K177R
  • capsid:I44T
  • capsid:A119S
  • env:K93R
  • env:T123N
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T227C
  • C393T
  • G451T
  • C519T
  • A630G
  • G876A
  • T1332C
  • C1334A
  • A1401G
  • C1422T
  • T1442C
  • C1465T
  • A1500G
  • G1827A
  • T1965C
  • C2100T
  • C2371T
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I308V

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:H87L
  • NS3:S334T

NS4B

  • NS4B:S14I

NS5

  • NS5:K29T

capsid

  • capsid:I44T
  • capsid:A119S

env

  • env:T123N
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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