This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000M05F.1

Viet_Nam/LOC_000M05F.1/2016
S. T. Chu, X. Bi, A. Ishizaki, M. Ago, K. Kobayashi, S. Koike & H. Ichimura

Kanazawa University, Department of Viral Infections and International Health

Sample details

Collection date
2016
Earliest release date
2019-03-03
Sampling location
Viet Nam (National Hospital of Pediatric, Ha Noi)
Isolate name
407TS/NHP

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-12 21:09insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-03-03
NCBI update date
2019-03-03
INSDC accession

Host

Host
Is lab host
True

Submission details

Submission ID
MH557187.1
Submitting group
Date submitted
2026-06-12 21:09:01 UTC
Date released
2026-06-12 21:17:57 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
164
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • C2444T
  • A2447G
  • G2459A
  • T2480C
  • A2491G
  • C2495A
  • C2503G
  • A2504G
  • T2507C
  • T2508C
  • A2510G
  • T2513G
  • C2525A
  • C2527A
  • G2529A
  • C2534A
  • A2537G
  • C2552A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K18R
  • VP1:P22R
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:S72L
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
Deletions
N/A
Insertions
N/A

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