This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LX2S.1

USA/LOC_000LX2S.1/2023-07-17
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2023-07-17
Earliest release date
2025-09-03
Sampling location
USA (Nebraska; Box Butte)
Isolate name
UNMC0685

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-17 17:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-03
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310047.1
Submitting group
Date submitted
2026-02-17 17:37:27 UTC
Date released
2026-02-17 18:01:43 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
91
Length
10260 (93%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A202G
  • G222A
  • G237A
  • T348C
  • C435T
  • A507G
  • T570C
  • A630G
  • G792A
  • C1053T
  • T1083A
  • G1117A
  • C1242T
  • C1356T
  • T1442C
  • C1465T
  • C1560T
  • C1953T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:K96R

    • NS3

  • NS3:E180D
  • NS3:I435L

    • NS4A

  • NS4A:P100S

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:C139S
  • NS5:Q765H

    • capsid

  • capsid:S36G

    • env

  • env:A51T
  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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