This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LWRE.1

Display Name: USA/LOC_000LWRE.1/2017-08-09
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2017-08-09
Collection date (lower bound)
2017-08-09
Collection date (upper bound)
2017-08-09
Earliest release date
2025-09-02
Collection country
USA
Collection subdivision level 1
Nebraska; Scottsbluff
Isolate name
UNMC0301

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-09-04
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10260
Total SNPs
87
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
1
Total frame shifts
0
Completeness
93.02%
Total stop codons
0

Submission details

Submission ID
OZ310008.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:42:59 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C474T
  • G575A
  • T585C
  • A630G
  • C631T
  • C720T
  • G756A
  • G1117A
  • C1209T
  • A1342G
  • G1419A
  • T1442C
  • C1465T
  • G1680A
  • C1704T
  • G1860A
  • C1959T
  • T2166A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS1

  • NS1:Y35H
  • NS1:D208G

    • NS3

  • NS3:V22A

    • NS4B

  • NS4B:N26T

    • NS5

  • NS5:H42Y
  • NS5:A860V

    • env

  • env:A51T
  • env:I126V
  • env:V159A
  • env:L167F

    • prM

  • prM:R37K
    • Deletions
    None
    Insertions
    None

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