This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LWPJ.1

Germany/LOC_000LWPJ.1/2016-07
S. Boettcher, S. Diedrich & K. Keeren

Robert Koch Institute, National Reference Centre for Poliomyelitis and Enteroviruses

Sample details

Collection date
2016-07
Earliest release date
2018-08-18
Sampling location
Germany
Isolate name
992305

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-12 21:09insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-08-18
NCBI update date
2018-08-18
INSDC accession

Host

Host

Submission details

Submission ID
MH472694.1
Submitting group
Date submitted
2026-06-12 21:09:01 UTC
Date released
2026-06-12 21:17:57 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
153
Total ambiguous nucs
1
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • G2465A
  • T2471C
  • T2483C
  • G2484A
  • T2489C
  • A2491G
  • G2492A
  • C2501T
  • C2503A
  • T2513A
  • C2519T
  • C2527A
  • A2528G
  • G2529A
  • C2531T
  • C2534G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:V16M
  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:S275A
  • VP1:D282N
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue