This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LWPJ.1

Display Name: USA/LOC_000LWPJ.1/2023-08-07
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2023-08-07
Collection date (lower bound)
2023-08-07
Collection date (upper bound)
2023-08-07
Earliest release date
2025-09-03
Collection country
USA
Collection subdivision level 1
Nebraska; Scotts Bluff
Isolate name
UNMC0538

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-03
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex

Alignment and QC metrics

Length
10260
Total SNPs
116
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.03%
Total stop codons
0

Submission details

Submission ID
OZ310045.1
Submitting group
Date submitted
2025-11-10 19:00:04 UTC
Date released
2025-11-10 19:16:41 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A418G
  • A630G
  • C687T
  • A765G
  • A939G
  • T946C
  • A1044G
  • T1155C
  • C1170T
  • G1257T
  • C1356T
  • A1401G
  • T1410G
  • T1442C
  • C1465T
  • T1647C
  • C1878T
  • G1887A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:I37V
  • NS2A:T52I
  • NS2A:L95F

    • NS2B

  • NS2B:I107V

    • NS3

  • NS3:E182D
  • NS3:S334A

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:M19L
  • NS5:D312E
  • NS5:T341I

    • capsid

  • capsid:K108E

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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