This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LW9D.1

USA/LOC_000LW9D.1/2020-08-21
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2020-08-21
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Hall)
Isolate name
UNMC0618

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-25 15:55insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310020.1
Submitting group
Date submitted
2026-02-25 15:55:43 UTC
Date released
2026-02-25 16:12:34 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
68
Total unknown nucs
1301
Length
10083 (79.6%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C452G
  • A630G
  • C775T
  • C937T
  • A1401G
  • T1442C
  • C1465T
  • T1608C
  • A1683G
  • G1941A
  • T1965C
  • A2097C
  • C2145T
  • T2190C
  • C2371T
  • C2466T
  • T2664C
  • C3018T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T
  • NS3:T356I

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:T641A

    • capsid

  • capsid:A119G

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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