This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
West Nile Virus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
West Nile Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000LVX3.1
Download
Download FASTA
Download metadata TSV
Italy/LOC_000LVX3.1/2009-09-09
M. Calzolari,
P. Bonilauri &
I. Barbieri
Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia-Romagna
Sample details
Collection date
2009-09-09
Earliest release date
2010-07-07
Sampling location
Italy
Isolate name
WN-MO-m7/2009
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-08 16:32
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2010-07-07
NCBI update date
2016-07-25
INSDC accession
HM138742.1
Host
Host
common house mosquito; northern house mosquito (Culex pipiens)
Submission details
Submission ID
HM138742.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-08 16:31:52 UTC
Date released
2026-05-08 17:02:41 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LVX3.1.embl
Alignment and QC
Total SNPs
11
Length
408 (3.7%)
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
282
T
G
354
A
C
381
T
C
483
T
G
492
A
G
495
T
C
561
T
C
600
T
T
606
C
C
624
T
A
630
G
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
N/A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue