This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVX3.1

USA/UNMC0301/2017-08-09
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2017-08-09
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Scottsbluff)
Isolate name
UNMC0301

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-05 16:06insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310008.1
Submitting group
Date submitted
2026-03-05 16:06:25 UTC
Date released
2026-03-05 16:24:09 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
87
Total unknown nucs
1
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS1:Y35H
  • NS1:D208G
  • NS2B:A103V
  • NS3:V22A
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:N26T
  • NS5:H42Y
  • NS5:K177R
  • NS5:A860V
  • env:A51T
  • env:K93R
  • env:T126V
  • env:I159A
  • prM:R37K
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C474T
  • G575A
  • T585C
  • A630G
  • C631T
  • C720T
  • G756A
  • G1117A
  • C1209T
  • A1342G
  • G1419A
  • T1442C
  • C1465T
  • G1680A
  • C1704T
  • G1860A
  • C1959T
  • T2166A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS1

  • NS1:Y35H
  • NS1:D208G

NS3

  • NS3:V22A

NS4B

  • NS4B:N26T

NS5

  • NS5:H42Y
  • NS5:A860V

env

  • env:A51T
  • env:I126V
  • env:V159A
  • env:L167F

prM

  • prM:R37K
Deletions
N/A
Insertions
N/A

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