This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVW5.1

Display Name: Romania/LOC_000LVW5.1/2019
Dinu, S.; Stancu, I. G.; Cotar, A. I.; Ceianu, C. S.; Pintilie, G. V.; Karpathakis, I.; Falcuta, E.; Csutak, O.; Prioteasa, F. L.; Tiron, G. V.

Submission details

Submission ID
PP533495.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-21 17:47:49 UTC
Date released
2025-03-21 17:55:13 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-21 17:47insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
National Military Medical Institute for Research and Development, Molecular Epidemiology for Communicable Diseases Laboratory

Alignment and QC metrics

Completeness
6.48%
Frame shifts
NS5:811-905(nt:10110-10395)
Length
698
Total ambiguous nucs
0
Total deleted nucs
17
Total frame shifts
1
Total inserted nucs
0
Total SNPs
142
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2024-11-05
Collection country
Romania
Collection date
2019
Collection date (lower bound)
2019-01-01
Collection date (upper bound)
2019-12-31
Isolate name
RO_moTV3/2019

Host

Host name scientific
Culex pipiens
Host taxon id
7175

INSDC

INSDC accession
PP533495.1
NCBI release date
2024-11-05
NCBI update date
2024-11-05

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C9402A
  • T9405C
  • T9408A
  • T9417C
  • C9430A
  • C9432G
  • G9435A
  • T9438G
  • T9441C
  • T9444C
  • A9447G
  • G9449A
  • C9453T
  • C9456G
  • T9465C
  • A9477G
  • G9486A
  • G9489A
    • Deletions
    10093-10109
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
    • Deletions
    NS5:805-810
    Insertions
    None

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