This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVW5.1

USA/UNMC0037/2012-07-26
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2012-07-26
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Madison)
Isolate name
UNMC0037

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-05 16:06insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310007.1
Submitting group
Date submitted
2026-03-05 16:06:25 UTC
Date released
2026-03-05 16:24:09 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
42
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:E180D
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:R546S
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T1442C
  • C1465T
  • C1557T
  • C1953T
  • C2466T
  • C2787T
  • A2844G
  • C3300T
  • T3363C
  • T3531C
  • T4101C
  • C4107T
  • A4245T
  • C4563T
  • C4803T
  • C4920T
  • A5151T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:E180D

NS5

  • NS5:R546S

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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