This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
West Nile Virus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
West Nile Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000LVSD.1
Download
Download FASTA
Download metadata TSV
USA/UNMC0194/2014-08-08
S. Jr. Freed,
S. Chandler,
S. Uhm,
D. Gurung,
A. Butz,
K. Herzog &
J. R. Fauver
University of Nebraska Medical Center, Omaha, Nebraska
Sample details
Collection date
2014-08-08
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Chase)
Isolate name
UNMC0194
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-20 13:10
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
OZ310003.1
BioProject accession
PRJEB96341
BioSample accession
SAMEA119799694
Host
Host
Culex tarsalis
Submission details
Submission ID
OZ310003.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-20 13:09:48 UTC
Date released
2026-03-20 13:51:30 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LVSD.1.embl
Alignment and QC
Total SNPs
86
Total unknown nucs
1
Length
10275 (93.2%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
I
236
V
NS2A:
R
188
K
NS2B:
A
103
V
NS2B:
V
120
I
NS3:
T
249
P
NS3:
I
356
T
NS4A:
V
85
A
NS4B:
V
126
I
NS4B:
I
240
M
NS5:
V
49
I
NS5:
K
177
R
NS5:
P
528
S
capsid:
K
104
R
capsid:
A
112
V
env:
K
84
R
env:
K
93
R
env:
T
126
I
env:
I
159
A
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
120
T
C
340
T
A
407
G
C
431
T
C
435
T
G
588
A
A
630
G
T
891
C
C
969
T
C
1065
T
C
1170
T
A
1217
G
T
1442
C
C
1465
T
G
1662
A
C
1707
T
C
1750
T
G
1950
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
I
236
V
NS2A
NS2A:
R
188
K
NS2B
NS2B:
V
120
I
NS4B
NS4B:
V
126
I
NS4B:
I
240
M
NS5
NS5:
V
49
I
NS5:
P
528
S
capsid
capsid:
K
104
R
capsid:
A
112
V
env
env:
K
84
R
env:
V
159
A
env:
L
167
F
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue