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LOC_000LVQH.1
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Download FASTA
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unknown/HH961658.1/unknown
S. J. Wong &
S. Pei-Yong
Sample details
Earliest release date
2010-10-31
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-25 19:19
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2010-10-31
NCBI update date
2010-10-31
INSDC accession
HH961658.1
Submission details
Submission ID
HH961658.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-25 19:19:18 UTC
Date released
2026-06-25 19:34:38 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LVQH.1.embl
Alignment and QC
Total SNPs
15
Length
10975 (99.5%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS2B:
A
103
V
NS3:
T
249
P
NS3:
I
356
T
NS3:
G
440
A
NS4A:
V
85
A
NS5:
K
177
R
env:
K
93
R
env:
T
126
I
env:
I
159
V
env:
V
364
M
Variant
False
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
A
630
G
C
687
T
T
825
C
C
1465
T
G
1482
A
G
2056
A
C
3810
T
C
4107
T
G
5280
A
G
5930
C
T
6405
C
T
8235
C
T
8451
C
C
10338
T
C
10408
T
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS3
NS3:
G
440
A
env
env:
L
167
F
env:
V
364
M
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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