This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVQH.1

unknown/HH961658.1/unknown
S. J. Wong & S. Pei-Yong

Sample details

Earliest release date
2010-10-31

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-25 19:19insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-10-31
NCBI update date
2010-10-31
INSDC accession

Submission details

Submission ID
HH961658.1
Submitting group
Date submitted
2026-06-25 19:19:18 UTC
Date released
2026-06-25 19:34:38 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
15
Length
10975 (99.5%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:G440A
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159V
  • env:V364M
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C687T
  • T825C
  • C1465T
  • G1482A
  • G2056A
  • C3810T
  • C4107T
  • G5280A
  • G5930C
  • T6405C
  • T8235C
  • T8451C
  • C10338T
  • C10408T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:G440A

env

  • env:L167F
  • env:V364M
Deletions
N/A
Insertions
N/A

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