This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVQH.1

Italy/LOC_000LVQH.1/2009-07-23
M. Calzolari, P. Bonilauri & I. Barbieri

Istituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia-Romagna

Sample details

Collection date
2009-07-23
Earliest release date
2010-07-07
Sampling location
Italy
Isolate name
WN-MO-m5/2009

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-27 18:32insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-07-07
NCBI update date
2016-07-25
INSDC accession

Host

Host

Submission details

Submission ID
HM138738.1
Submitting group
Date submitted
2026-05-27 18:31:48 UTC
Date released
2026-05-27 18:47:55 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
9
Total deleted nucs
457
Total frame shifts
2
Frame shifts
capsid:51-123(nt:246-465),prM:48-167(nt:605-966)
Length
379 (7.58%)
Amino Acid Mutations from founder clade
  • capsid:L48W
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T239G
  • C282T
  • G354A
  • C381T
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
Deletions

245, 256, 601-604, 609-1059
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

capsid

  • capsid:L48W
Deletions

prM

prM:46, prM:47
Insertions
N/A

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