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LOC_000LVQH.1
Download
Download FASTA
Download metadata TSV
Iran/WNV-Sepid-River/2015-08-05
N. Shahhosseini,
S. Chinikar,
S. H. Moosa-Kazemi,
M. M. Sedaghat,
M. H. Kayedi,
R. Luhken,
J. Schmidt-Chanasit &
R. Luehken
Bernhard Nocht Institute for Tropical Medicine, Virology
Sample details
Collection date
2015-08-05
Earliest release date
2017-08-06
Sampling location
Iran
Isolate name
WNV-Sepid-River
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-22 15:07
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-08-06
NCBI update date
2018-05-01
INSDC accession
MF462262.1
Host
Host
common house mosquito; northern house mosquito (Culex pipiens pipiens)
Submission details
Submission ID
MF462262.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-22 15:07:45 UTC
Date released
2026-06-22 15:23:43 UTC
Lineage
Lineage
2
Files
Annotations
LOC_000LVQH.1.embl
Alignment and QC
Total SNPs
1097
Total inserted nucs
10
Total deleted nucs
7
Total frame shifts
2
Frame shifts
NS2A:122-124(nt:3889-3895),NS4B:31-33(nt:7006-7014)
Length
5217 (47.3%)
Amino Acid Mutations from founder clade
NS1:
E
141
K
NS1:
E
334
G
NS3:
H
249
P
NS3:
S
334
T
NS3:
G
380
E
NS3:
I
384
V
NS4A:
T
91
H
NS4B:
-
28
L
NS4B:
-
29
G
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
A
1833
G
A
1845
G
A
1848
G
T
1855
C
C
1869
A
C
1875
A
C
1878
A
G
1887
A
T
1890
G
G
1896
A
T
1899
C
C
1900
G
T
1901
C
A
1914
T
A
1920
T
T
1923
C
C
1926
T
C
1929
A
Show more
Deletions
3885-3888, 6994-6996
Insertions
ins_3895:AATG, ins_7005:GTTGA, ins_7014:G
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
M
15
L
NS1
NS1:
S
9
G
NS1:
Y
34
F
NS1:
K
51
A
NS1:
V
71
I
NS1:
E
94
N
NS1:
S
99
A
NS1:
T
105
A
NS1:
I
113
M
NS1:
L
123
I
NS1:
V
135
I
NS1:
Q
146
A
NS1:
L
153
M
NS1:
K
170
R
NS1:
V
171
I
NS1:
S
174
T
NS1:
L
192
M
NS1:
I
194
V
NS1:
R
205
G
Show more
NS2A
NS2A:
M
34
I
NS2A:
L
38
M
NS2A:
I
39
L
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
L
126
S
NS2A:
I
129
V
NS2A:
A
137
S
NS2A:
T
147
S
NS2A:
T
150
N
NS2A:
R
167
K
NS2A:
I
183
V
NS2A:
R
188
K
NS2A:
A
193
S
NS2A:
S
201
C
Show more
NS2B
NS2B:
A
41
V
NS2B:
S
61
T
NS2B:
V
103
A
NS2B:
V
120
I
NS3
NS3:
Q
92
H
NS3:
F
130
Y
NS3:
D
172
E
NS3:
I
175
A
NS3:
R
203
K
NS3:
R
215
K
NS3:
A
233
S
NS3:
N
253
S
NS3:
V
283
I
NS3:
S
302
A
NS3:
S
331
A
NS3:
S
334
T
NS3:
L
336
M
NS3:
S
347
T
NS3:
T
356
V
NS3:
G
380
E
NS3:
T
436
E
NS3:
E
439
D
Show more
NS4A
NS4A:
I
6
V
NS4A:
K
11
R
NS4A:
T
64
S
NS4A:
M
65
L
NS4A:
A
85
V
NS4A:
V
86
I
NS4A:
V
89
A
NS4A:
T
91
H
NS4B
NS4B:
S
11
N
NS4B:
F
17
L
NS4B:
Q
19
H
NS4B:
R
20
K
NS4B:
I
21
P
NS4B:
K
24
R
NS4B:
N
26
T
NS4B:
F
27
T
NS4B:
S
28
L
NS4B:
M
29
G
env
env:
L
312
A
env:
A
369
S
env:
K
413
R
env:
V
442
I
env:
L
483
M
Deletions
NS2A
NS2A:121
Insertions
NS4B
ins_NS4B:29:V
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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