This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVQH.1

USA/AVA1509017/2015-11-11
C. Aroh, M. D'Anton, C. Liang, P. Raj, B. Wakeland, N. Yan & E. Wakeland

UT Southwestern Medical Center, Department of Immunology

Sample details

Collection date
2015-11-11
Earliest release date
2018-12-31
Sampling location
USA (Denton Co. TX)
Isolate name
AVA1509017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-04 12:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-12-31
NCBI update date
2018-12-31
INSDC accession

Host

Host

Submission details

Submission ID
MF175877.1
Submitting group
Date submitted
2026-06-04 12:51:51 UTC
Date released
2026-06-04 13:11:27 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
82
Total ambiguous nucs
8
Length
11029 (99.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:Y35H
  • NS1:D208G
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:N26T
  • NS5:H42Y
  • NS5:K177R
  • NS5:A860V
  • env:A51T
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C474T
  • T585C
  • A630G
  • C631T
  • G756A
  • C999T
  • G1117A
  • G1419A
  • T1442C
  • C1465T
  • G1680A
  • C1959T
  • T2166A
  • C2466T
  • T2572C
  • A2580G
  • G3027T
  • A3092G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:Y35H
  • NS1:D208G

NS4B

  • NS4B:N26T

NS5

  • NS5:H42Y
  • NS5:A860V

env

  • env:A51T
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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