This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVQH.1

Tunisia/MS_11/2012-11-01
A. Monastiri, B. Mechri, A. Vazquez-Gonzalez, M. Ar Gouilh, M. Chakroun, C. Loussaief, M. Mastouri, N. Dimassi, L. Boughzala, M. Aouni, J. Serra-Cobo & L. G. Le Gouil

Faculty of Pharmacy

Sample details

Collection date
2012-11
Earliest release date
2018-03-28
Sampling location
Tunisia
Isolate name
MS_11

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-03-28
NCBI update date
2018-03-28
INSDC accession

Host

Host

Submission details

Submission ID
MF371359.1
Submitting group
Date submitted
2026-07-01 18:03:48 UTC
Date released
2026-07-01 18:19:42 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
4
Total ambiguous nucs
2
Length
239 (2.15%)
Amino Acid Mutations from founder clade
  • NS5:S292L
  • NS5:H296Q
  • NS5:D297E
  • NS5:M345T
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C8555T
  • C8568A
  • T8571G
  • T8714C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:S292L
  • NS5:H296Q
  • NS5:D297E
  • NS5:M345T
Deletions
N/A
Insertions
N/A

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