This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
West Nile Virus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
West Nile Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000LVQH.1
Download
Download FASTA
Download metadata TSV
Israel/twn9/1953-01-01
H. Albayrak &
A. Barrett
UTMB, Pathology
Sample details
Collection date
1953
Earliest release date
2011-04-05
Sampling location
Israel
Isolate name
twn9
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-25 13:21
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2011-04-05
NCBI update date
2011-04-05
INSDC accession
HM051416.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
HM051416.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-25 13:20:47 UTC
Date released
2026-06-25 13:35:19 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LVQH.1.embl
Alignment and QC
Total SNPs
527
Length
11029 (100%)
Amino Acid Mutations from founder clade
NS1:
I
8
T
NS1:
D
234
E
NS1:
E
289
D
NS2A:
F
9
L
NS2B:
L
100
I
NS3:
T
249
P
NS4B:
S
11
N
NS4B:
V
23
A
NS4B:
R
37
K
NS4B:
A
123
T
NS5:
K
269
R
NS5:
R
403
K
NS5:
T
719
I
NS5:
A
860
T
capsid:
V
113
F
env:
F
142
S
env:
S
156
P
env:
H
285
Y
env:
T
332
A
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
A
65
G
T
195
A
G
222
A
C
381
T
G
433
T
C
445
T
A
459
G
G
504
T
T
513
C
T
528
C
C
561
T
T
585
C
A
591
G
C
600
T
T
615
C
C
624
T
A
630
G
T
648
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
M
15
L
NS1
NS1:
I
8
T
NS1:
D
234
E
NS1:
E
289
D
NS2A
NS2A:
F
9
L
NS2B
NS2B:
L
100
I
NS2B:
V
103
A
NS3
NS3:
T
356
I
NS4A
NS4A:
A
85
V
NS4B
NS4B:
S
11
N
NS4B:
V
23
A
NS4B:
R
37
K
NS4B:
A
123
T
NS5
NS5:
R
177
K
NS5:
K
269
R
NS5:
R
403
K
NS5:
T
719
I
NS5:
A
860
T
capsid
capsid:
V
113
F
env
env:
R
93
K
env:
I
126
T
env:
F
142
S
env:
S
156
P
env:
V
159
I
env:
L
167
F
env:
H
285
Y
env:
T
332
A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue