This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
Israel/twn9/1953-01-01
H. Albayrak & A. Barrett

UTMB, Pathology

Sample details

Collection date
1953
Earliest release date
2011-04-05
Sampling location
Israel
Isolate name
twn9

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-25 13:21insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2011-04-05
NCBI update date
2011-04-05
INSDC accession

Submission details

Submission ID
HM051416.1
Date submitted
2026-06-25 13:20:47 UTC
Date released
2026-06-25 13:35:19 UTC

Lineage

Lineage
1A

Files


Alignment and QC

Total SNPs
527
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • NS1:I8T
  • NS1:D234E
  • NS1:E289D
  • NS2A:F9L
  • NS2B:L100I
  • NS3:T249P
  • NS4B:S11N
  • NS4B:V23A
  • NS4B:R37K
  • NS4B:A123T
  • NS5:K269R
  • NS5:R403K
  • NS5:T719I
  • NS5:A860T
  • capsid:V113F
  • env:F142S
  • env:S156P
  • env:H285Y
  • env:T332A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A65G
  • T195A
  • G222A
  • C381T
  • G433T
  • C445T
  • A459G
  • G504T
  • T513C
  • T528C
  • C561T
  • T585C
  • A591G
  • C600T
  • T615C
  • C624T
  • A630G
  • T648C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:M15L

NS1

  • NS1:I8T
  • NS1:D234E
  • NS1:E289D

NS2A

  • NS2A:F9L

NS2B

  • NS2B:L100I
  • NS2B:V103A

NS3

  • NS3:T356I

NS4A

  • NS4A:A85V

NS4B

  • NS4B:S11N
  • NS4B:V23A
  • NS4B:R37K
  • NS4B:A123T

NS5

  • NS5:R177K
  • NS5:K269R
  • NS5:R403K
  • NS5:T719I
  • NS5:A860T

capsid

  • capsid:V113F

env

  • env:R93K
  • env:I126T
  • env:F142S
  • env:S156P
  • env:V159I
  • env:L167F
  • env:H285Y
  • env:T332A
Deletions
N/A
Insertions
N/A

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