This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVPK.1

Display Name: USA/LOC_000LVPK.1/2022-08-29
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2022-08-29
Collection date (lower bound)
2022-08-29
Collection date (upper bound)
2022-08-29
Earliest release date
2025-09-02
Collection country
USA
Collection subdivision level 1
Nebraska; Dakota
Isolate name
UNMC0012

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-09-04
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10260
Total SNPs
107
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.03%
Total stop codons
0

Submission details

Submission ID
OZ310014.1
Submitting group
Date submitted
2025-09-12 15:10:02 UTC
Date released
2025-09-12 15:25:23 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T199C
  • G305A
  • C340T
  • C435T
  • T468C
  • T477C
  • C561T
  • A580T
  • A630G
  • C954T
  • A981T
  • T1062C
  • G1095T
  • A1341G
  • T1442C
  • A1446G
  • C1465T
  • G1662A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I26V

    • NS3

  • NS3:I241V

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:E14A
  • NS5:Y533F
  • NS5:D635N

    • capsid

  • capsid:R70K

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:M39L
    • Deletions
    None
    Insertions
    None

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