This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVPK.1

Display Name: China/LOC_000LVPK.1/2016
H. Zeng & H. Zheng

Sample details

Collection date
2016
Collection date (lower bound)
2016-01-01
Collection date (upper bound)
2016-12-31
Earliest release date
2020-09-30
Collection country
China
Isolate name
2016-CA10-674

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-14 14:32insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Guangdong Provincial Centre for Disease Control and Prevention, Institute of Pathogenic Microbiology

INSDC

NCBI release date
2020-09-30
INSDC accession CV-A10

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A10

Length CV-A10
894
Total SNPs CV-A10
201
Total inserted nucs CV-A10
0
Total deleted nucs CV-A10
0
Total ambiguous nucs CV-A10
0
Total unknown nucs CV-A10
0
Total frame shifts CV-A10
0
Completeness CV-A10
12.07%

Submission details

Submission ID
MN451280.1.CV-A10
Submitting group
Date submitted
2025-10-14 14:32:52 UTC
Date released
2025-10-14 15:08:32 UTC

Clade

Clade CV-A10
C

Genotype

Genotype
CV-A10

Files

Annotations

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • C2439T
  • C2445T
  • C2454T
  • C2457A
  • C2460T
  • C2463T
  • C2466T
  • T2470C
  • A2473G
  • C2475G
  • G2477A
  • T2481A
  • T2483C
  • G2487C
  • C2488A
  • G2490A
  • A2496T
  • C2498G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the AY421767.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue