This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVNM.1

USA/UNMC0558/2023-08-11
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2023-08-11
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Scotts Bluff)
Isolate name
UNMC0558

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OZ309967.1
Submitting group
Date submitted
2026-08-18 20:07:58 UTC
Date released
2026-08-18 20:35:31 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
120
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:L162I
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:T57S
  • NS2B:A103V
  • NS2B:I107V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS4B:A99S
  • NS5:M19L
  • NS5:K177R
  • NS5:D312E
  • env:K93R
  • env:T126I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C687T
  • A777G
  • C912T
  • A939G
  • T1155C
  • C1194T
  • A1401G
  • T1442C
  • C1448T
  • C1465T
  • A1701G
  • T1881C
  • T1965C
  • A2097C
  • C2304T
  • G2365A
  • C2371T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:L162I

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS2B

  • NS2B:T57S
  • NS2B:I107V

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I
  • NS4B:A99S

NS5

  • NS5:M19L
  • NS5:D312E

env

  • env:V159A
  • env:A161V
  • env:L167F
  • env:A467T
Deletions
N/A
Insertions
N/A

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