This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVG0.1

USA/LOC_000LVG0.1/2018-09-04
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2018-09-04
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Wayne)
Isolate name
UNMC0365

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-17 17:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ309993.1
Submitting group
Date submitted
2026-02-17 17:37:27 UTC
Date released
2026-02-17 18:01:43 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
99
Length
10260 (93%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C381T
  • C422T
  • C435T
  • A630G
  • A981T
  • T1143C
  • T1442C
  • C1465T
  • G1503A
  • T1529C
  • G1662A
  • C1707G
  • C1750T
  • G1938A
  • G2058A
  • C2109T
  • A2220T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I26V

    • NS4B

  • NS4B:R37G
  • NS4B:L96F
  • NS4B:I240M

    • NS5

  • NS5:H296Y
  • NS5:K314R
  • NS5:A860T

    • capsid

  • capsid:T109I

    • env

  • env:V159A
  • env:L167F
  • env:V188A
    • Deletions
    N/A
    Insertions
    N/A

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