This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVAC.1

Display Name: USA/LOC_000LVAC.1/2016-07-08
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2016-07-08
Collection date (lower bound)
2016-07-08
Collection date (upper bound)
2016-07-08
Earliest release date
2025-09-02
Collection country
USA
Collection subdivision level 1
Nebraska; Scottsbluff
Isolate name
UNMC0257

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 07:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-09-04
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
9603
Total SNPs
69
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
1045
Total frame shifts
0
Completeness
77.60%
Total stop codons
0

Submission details

Submission ID
OZ310001.1
Submitting group
Date submitted
2025-09-16 07:27:46 UTC
Date released
2025-09-16 07:40:56 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A462G
  • A630G
  • T1442C
  • C1465T
  • C1473T
  • C1750T
  • T1788C
  • A1795G
  • T1971C
  • C2067T
  • C2109T
  • C2304T
  • C2466T
  • C2484T
  • A2595G
  • G2694T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS3

  • NS3:T356I

    • NS5

  • NS5:T25I

    • env

  • env:V159A
  • env:L167F
  • env:N277D
    • Deletions
    None
    Insertions
    None

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