This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LV9E.1

Display Name: USA/LOC_000LV9E.1/2017-07-17
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2017-07-17
Collection date (lower bound)
2017-07-17
Collection date (upper bound)
2017-07-17
Earliest release date
2025-09-02
Collection country
USA
Collection subdivision level 1
Nebraska; Garden
Isolate name
UNMC0291

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-09-04
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10260
Total SNPs
96
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
1
Total frame shifts
0
Completeness
93.02%
Total stop codons
0

Submission details

Submission ID
OZ310000.1
Submitting group
Date submitted
2025-09-12 15:10:02 UTC
Date released
2025-09-12 15:25:23 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • C456T
  • G520A
  • A630G
  • A788G
  • T928C
  • T1092C
  • C1329T
  • C1353T
  • C1371T
  • T1407C
  • T1442C
  • C1465T
  • A1539G
  • G1662A
  • T1681C
  • C1750T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I107T

    • NS4A

  • NS4A:I6V

    • NS4B

  • NS4B:I240M

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:V19I
  • prM:K108R
  • prM:F155L
    • Deletions
    None
    Insertions
    None

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