This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LV9E.1

Display Name: USA/LOC_000LV9E.1/2023-06-26
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2023-06-26
Collection date (lower bound)
2023-06-26
Collection date (upper bound)
2023-06-26
Earliest release date
2025-09-02
Collection country
USA
Collection subdivision level 1
Nebraska; Lancaster
Isolate name
UNMC0003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-16 14:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-09-04
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex

Alignment and QC metrics

Length
10260
Total SNPs
112
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.03%
Total stop codons
0

Submission details

Submission ID
OZ309960.1
Submitting group
Date submitted
2025-10-16 14:19:38 UTC
Date released
2025-10-16 14:38:10 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C315T
  • T339C
  • T348C
  • C519T
  • A580T
  • T609C
  • A630G
  • C783T
  • C807T
  • C990T
  • G1365A
  • A1401G
  • T1442C
  • C1465T
  • A1674G
  • T1872C
  • T1923C
  • T1965C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4A

  • NS4A:V89A

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:M91I

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:M39L
    • Deletions
    None
    Insertions
    None

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