This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LUTC.1

France/LOC_000LUTC.1/2012-09-13
L. Josset, I. Schuffenecker & B. Lina

Centre National de Reference des Enterovirus et Parechovirus, Hospices Civils de Lyon

Sample details

Collection date
2012-09-13
Earliest release date
2017-11-29
Sampling location
France (Lyon)
Isolate name
12-37-455

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-11-29
NCBI update date
2017-11-29
INSDC accession

Host

Host

Submission details

Submission ID
KY272869.1
Submitting group
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC

Clade

Clade EV-D68
B1

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
116
Total ambiguous nucs
1
Length
940 (12.7%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions
  • C2346T
  • T2349C
  • G2358A
  • T2373C
  • A2376T
  • T2379C
  • C2390T
  • A2392G
  • C2397T
  • G2405C
  • T2421C
  • G2425A
  • G2427C
  • T2433C
  • T2451C
  • T2454C
  • G2463A
  • C2478T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:S1L
  • VP1:N2D
  • VP1:G6A
  • VP1:V13I
  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95A
  • VP1:G97Q
  • VP1:T98A
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:N143S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
Deletions
N/A
Insertions
N/A

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