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LOC_000LUSE.1
Download
Download FASTA
Download metadata TSV
China/LOC_000LUSE.1/2014-04-10
Z. Zhang,
Q. Wei,
Z. Dong,
M. Wang &
W. Shi
Taishan Medical College, Institute of Pathogen Biology
Sample details
Collection date
2014-04-10
Earliest release date
2017-02-12
Sampling location
China
Isolate name
WH21R/Shandong/China/2014
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-02-12
NCBI update date
2017-02-12
INSDC accession
KY272007.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KY272007.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC
Clade
Clade CV-A10
C
Genotype
Genotype
CV-A10
Alignment and QC
Total SNPs
1484
Total inserted nucs
28
Total deleted nucs
9
Length
7399 (99.6%)
Nucleotide mutations
Mutations called relative to the
AY421767.1
reference
Substitutions
T
56
C
G
58
A
A
60
T
C
62
T
T
64
C
T
67
A
C
69
T
C
90
A
T
103
C
A
106
T
C
108
A
A
109
C
A
118
C
C
120
T
C
122
T
C
125
G
C
127
T
G
133
A
Show more
Deletions
93-95, 308-310, 1393-1395
Insertions
ins_101:AA, ins_127:ACT, ins_7409:AAAAAAAAAAAAAAAAAAAAAAA
Amino acid substitutions
Substitutions called relative to the
AY421767.1
reference
Substitutions
2A
2A:
V
29
A
2A:
N
57
E
2A:
I
82
V
2A:
E
102
A
2A:
V
121
I
2A:
L
123
I
2A:
D
136
N
2B
2B:
S
85
A
2B:
S
94
P
2C
2C:
N
9
S
2C:
I
36
V
2C:
L
56
M
2C:
S
61
A
2C:
A
75
V
2C:
I
76
M
2C:
K
99
R
2C:
V
108
M
2C:
Y
243
F
2C:
K
293
R
2C:
D
294
E
2C:
M
306
V
2C:
I
311
V
2C:
V
320
I
3A
3A:
E
13
D
3A:
T
17
A
3A:
E
39
D
3B
3B:
A
10
T
3C
3C:
A
18
V
3C:
I
30
V
3C:
I
49
V
3C:
I
86
V
3C:
T
93
N
3C:
A
95
S
3C:
I
116
V
3D
3D:
M
6
V
3D:
N
32
D
3D:
V
33
L
3D:
T
66
A
3D:
T
75
K
3D:
S
93
N
3D:
V
134
T
3D:
T
138
I
3D:
S
139
T
3D:
L
143
F
3D:
S
164
P
3D:
V
197
A
3D:
I
205
V
3D:
S
236
G
3D:
L
251
M
3D:
E
255
D
3D:
R
346
K
3D:
R
396
K
Show more
VP1
VP1:
S
13
G
VP1:
T
21
S
VP1:
S
22
G
VP1:
G
23
A
VP1:
Q
24
T
VP1:
D
25
N
VP1:
N
27
E
VP1:
T
28
S
VP1:
G
31
N
VP1:
A
33
T
VP1:
T
59
S
VP1:
M
70
V
VP1:
A
78
T
VP1:
S
81
N
VP1:
V
107
T
VP1:
E
144
G
VP1:
F
148
Y
VP1:
Q
223
L
Show more
VP2
VP2:
L
132
I
VP2:
E
143
Q
VP2:
H
146
T
VP2:
P
147
R
VP2:
N
150
T
VP2:
A
157
T
VP2:
S
160
T
VP2:
N
162
H
VP2:
S
176
A
VP2:
I
194
V
VP2:
V
218
I
VP2:
V
237
I
VP3
VP3:
L
2
I
VP3:
T
4
A
VP3:
E
17
D
VP3:
S
29
T
VP3:
S
33
T
VP3:
R
41
H
VP3:
D
60
E
VP3:
N
65
T
VP3:
A
73
S
VP3:
I
131
V
VP4
VP4:
S
7
T
VP4:
R
9
K
VP4:
S
42
T
Deletions
VP2
VP2:148
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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