This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Test organism (without alignment)
West Nile Virus
Browse
Submit
SeqSets
Login
Loculus
Browse
Submit
SeqSets
Login
Docs
API docs
LOC_000LSSG.1
Download
Download FASTA
Download metadata TSV
Display Name: Spain/LOC_000LSSG.1/2024-09-10
J. Perez-Florido &
M. Lara
Sample details
Collection date
2024-09-10
Collection date (lower bound)
2024-09-10
Collection date (upper bound)
2024-09-10
Earliest release date
2025-01-29
Collection country
Spain
Isolate name
unavailable
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-09-16 19:40
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Clinical Bioinformatics Area, Hospital Virgen del Rocio, Avenida Manuel Siurot s/n, 41003
INSDC
NCBI release date
2025-01-29
NCBI update date
2025-01-30
INSDC accession
OZ221437.1
Bioproject accession
PRJEB43037
Biosample accession
SAMEA117631457
Raw reads accession
ERR14216127
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
10939
Total SNPs
2228
Total inserted nucs
38
Total deleted nucs
17
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
NS4B:31-33(nt:7006-7014)
Completeness
98.99%
Total stop codons
0
Submission details
Submission ID
OZ221437.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-09-16 19:40:03 UTC
Date released
2025-09-16 19:56:08 UTC
Lineage
Lineage
2
Files
Annotations
LOC_000LSSG.1.embl
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
52
T
C
123
T
G
126
A
G
128
A
A
156
T
T
167
G
G
168
A
T
180
A
T
199
C
C
204
T
C
210
T
C
216
G
G
219
A
G
222
C
A
231
T
T
234
C
C
246
T
G
261
A
Show more
Deletions
6994-6996, 10467-10470, 10487-10494, 10904, 10921
Insertions
ins_7005:GTTGA, ins_7014:G, ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10452:AGA, ins_10461:AG, ins_10483:GTT, ins_10501:T
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
M
15
L
NS1
NS1:
S
9
G
NS1:
Y
34
F
NS1:
K
44
R
NS1:
K
51
A
NS1:
V
71
I
NS1:
E
94
N
NS1:
S
99
A
NS1:
T
105
A
NS1:
I
113
M
NS1:
L
123
I
NS1:
V
135
I
NS1:
K
141
E
NS1:
Q
146
A
NS1:
L
153
M
NS1:
K
170
R
NS1:
V
171
I
NS1:
S
174
T
NS1:
L
192
M
Show more
NS2A
NS2A:
M
34
I
NS2A:
L
38
M
NS2A:
I
39
L
NS2A:
S
68
A
NS2A:
M
90
L
NS2A:
N
104
S
NS2A:
V
112
A
NS2A:
H
119
Y
NS2A:
R
122
K
NS2A:
Q
123
N
NS2A:
I
124
V
NS2A:
L
126
S
NS2A:
I
129
V
NS2A:
A
137
S
NS2A:
T
147
S
NS2A:
T
150
N
NS2A:
R
167
K
NS2A:
I
183
V
Show more
NS2B
NS2B:
A
41
V
NS2B:
S
61
T
NS2B:
M
88
I
NS2B:
V
103
A
NS2B:
V
120
I
NS3
NS3:
K
11
R
NS3:
Q
92
H
NS3:
F
130
Y
NS3:
D
172
E
NS3:
I
175
A
NS3:
R
203
K
NS3:
R
215
K
NS3:
A
233
S
NS3:
P
249
H
NS3:
N
253
S
NS3:
V
283
I
NS3:
S
302
A
NS3:
S
331
A
NS3:
L
336
M
NS3:
S
347
T
NS3:
T
356
V
NS3:
V
384
I
NS3:
T
436
E
Show more
NS4A
NS4A:
I
6
V
NS4A:
K
11
R
NS4A:
T
64
S
NS4A:
M
65
L
NS4A:
A
85
V
NS4A:
V
86
I
NS4A:
V
89
A
NS4B
NS4B:
S
11
N
NS4B:
F
17
L
NS4B:
Q
19
H
NS4B:
R
20
K
NS4B:
I
21
P
NS4B:
T
116
A
NS4B:
I
168
V
NS4B:
L
183
M
NS4B:
K
193
R
NS4B:
I
202
T
NS5
NS5:
Q
18
H
NS5:
T
25
A
NS5:
I
33
T
NS5:
K
45
R
NS5:
V
49
I
NS5:
I
78
V
NS5:
R
101
K
NS5:
C
139
A
NS5:
C
140
S
NS5:
I
162
V
NS5:
R
177
K
NS5:
V
181
I
NS5:
K
190
R
NS5:
L
197
T
NS5:
R
224
H
NS5:
V
229
I
NS5:
R
247
K
NS5:
Y
254
F
Show more
capsid
capsid:
S
11
N
capsid:
V
24
G
capsid:
S
100
T
capsid:
K
108
T
capsid:
T
109
A
capsid:
I
111
F
capsid:
A
112
T
capsid:
V
113
I
capsid:
M
114
L
capsid:
I
115
L
capsid:
S
120
C
capsid:
V
121
A
env
env:
E
55
D
env:
T
64
S
env:
K
71
R
env:
D
83
E
env:
R
93
K
env:
S
122
T
env:
I
126
T
env:
R
128
W
env:
T
129
I
env:
L
131
Q
env:
V
159
A
env:
L
167
F
env:
A
172
S
env:
N
199
S
env:
T
205
S
env:
T
208
A
env:
T
210
S
env:
V
232
T
Show more
prM
prM:
M
44
L
prM:
D
46
E
prM:
S
57
A
prM:
A
73
S
prM:
M
112
L
prM:
V
156
A
prM:
V
157
I
Deletions
NS4B:28-30
Insertions
ins_NS4B:22:TRETTLG
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue