This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LSSG.1

Spain/LOC_000LSSG.1/2024-08-17
C. S. Casimiro-Soriguer, J. Perez-Florido, J. L. Fernandez-Rueda, I. Pedrosa-Corral, V. Guillot-Sulay, N. Lorusso, L. J. Martinez-Gonzalez, J. M. Navarro-Mari, J. Dopazo, S. Sanbonmatsu-Gamez, E. A. Robles, M. Lara, A. Aguado, M. A. Rodriguez Iglesias, J. A. Lepe, F. Garcia, M. Perez-Alegre, E. Andujar, V. E. Jimenez, L. P. Camino, N. Loruso, U. Ameyugo, I. M. Vazquez, C. M. Lozano & J. A. Chaves

Clinical Bioinformatics Area, Hospital Virgen del Rocio, Avenida Manuel Siurot s/n, 41003

Sample details

Collection date
2024-08-17
Earliest release date
2025-08-01
Sampling location
Spain
Isolate name
unavailable

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-01
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OZ293771.1
Submitting group
Date submitted
2026-02-27 15:36:10 UTC
Date released
2026-02-27 15:53:47 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
450
Total unknown nucs
163
Length
10852 (96.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:A70S
  • NS2A:L158M
  • NS3:I175V
  • NS4B:E249D
  • NS5:K177R
  • NS5:K280R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T195A
  • T234C
  • C282T
  • A321G
  • C340T
  • G354A
  • G447T
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • G786A
  • T826C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A70S

NS2A

  • NS2A:L158M

NS2B

  • NS2B:V103A

NS3

  • NS3:I175V
  • NS3:P249T
  • NS3:T356I

NS4A

  • NS4A:A85V

NS4B

  • NS4B:E249D

NS5

  • NS5:K280R

env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

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