This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LSQL.1

Iran/LOC_000LSQL.1/2012
M. H. Kayedi, S. Chinikar, E. Mostafavi, S. Khakifirouz, T. Jalali, A. Hosseini-Chegeni, A. Naghizadeh, M. Niedrig, A. R. Fooks & N. Shahhosseini

Pasteur Institute of Iran

Sample details

Collection date
2012
Earliest release date
2015-10-04
Sampling location
Iran
Isolate name
IR-T29-RSA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-29 06:05insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2015-10-04
INSDC accession S

Host

Host

Submission details

Submission ID
KR136174.1.S
Submitting group
Date submitted
2026-04-29 06:05:23 UTC
Date released
2026-04-29 06:10:00 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
68
Length S
530 (31.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G134T
  • C166T
  • G169A
  • T172C
  • C178A
  • T182C
  • A186C
  • G190A
  • G196A
  • T199C
  • C208T
  • C217T
  • G229A
  • C235T
  • A268C
  • G271A
  • T289C
  • G292A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:V27L
  • NP:D44A
  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
Deletions
N/A
Insertions
N/A

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