This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LSQL.1

USA/LOC_000LSQL.1/2002
M. R. Henn, R. M. Newman, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, S. Sykes, M. Koehrsen, D. Borenstein, R. Engels, E. Freedman, M. Gellesch, E. Heilman, C. Howarth, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2002
Earliest release date
2011-01-10
Sampling location
USA (Connecticut)
Isolate name
WNV-1/US/BID-V4913/2002

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-23 00:20insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2011-01-10
NCBI update date
2011-01-10
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
HQ671720.1
Submitting group
Date submitted
2026-02-23 00:19:23 UTC
Date released
2026-02-23 00:28:20 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
45
Total inserted nucs
2
Total deleted nucs
252
Length
10737 (99.6%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • T1442C
  • C1465T
  • C2067T
  • C2466T
  • G2785A
  • C3366T
  • C4107T
  • A4122G
  • A4146G
  • C4803T
  • T4993C
  • G5280A
  • C5448T
  • C6138T
  • C6238T
  • T6405C
    • Deletions

    10663-10666, 10674-10682, 10686-10689, 10693-10695, 10699-10722, 10731-10755, 10761-10885, 10893-10911, 10919-10929, 10932-10936, 10941-10951, 10959, 10966-10976
    Insertions

    ins_10651:TC

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:V9M

    • NS1

  • NS1:A106T

    • NS4B

  • NS4B:T48A

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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