This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LSQL.1

Display Name: China/LOC_000LSQL.1/2018
X. Tang

Sample details

Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Earliest release date
2023-01-30
Collection country
China
Isolate name
CA16-18043

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-09 14:07insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Chongqing Medical University, Academy of pediatrics

INSDC

NCBI release date
2023-01-30
NCBI update date
2023-01-30
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
725
Total SNPs
174
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
9.78%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
OP351800.1
Submitting group
Date submitted
2025-12-09 14:07:24 UTC
Date released
2025-12-09 14:27:46 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2496C
  • T2499C
  • G2500T
  • G2502C
  • C2503T
  • A2508T
  • T2509G
  • C2511G
  • T2512A
  • A2514G
  • G2517A
  • G2521C
  • A2522T
  • C2529A
  • C2532T
  • C2541T
  • A2542G
  • T2544G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    VP1

  • VP1:A19S
  • VP1:S22A
  • VP1:L23M
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
  • VP1:L183M
  • VP1:A213E
  • VP1:P215L
  • VP1:S217A
  • VP1:A220L
  • VP1:I235V
    • Deletions
    None
    Insertions
    None

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