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LOC_000LRNR.1
Download
Download FASTA
Download metadata TSV
India/LOC_000LRNR.1/2017
P. D. Yadav
National Institute of Virology, Maximum Containment Laboratory
Sample details
Collection date
2017
Earliest release date
2019-04-01
Sampling location
India (Gaya district, Bihar State)
Isolate name
17-2249-2
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-04-01
NCBI update date
2019-04-01
INSDC accession
MH118035.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MH118035.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-09 13:33:52 UTC
Date released
2026-10-09 13:42:12 UTC
Clade
Clade CV-A10
F
Genotype
Genotype
CV-A10
Alignment and QC
Total SNPs
1610
Total inserted nucs
152
Total deleted nucs
11
Length
7550 (100%)
Nucleotide mutations
Mutations called relative to the
AY421767.1
reference
Substitutions
A
3
C
A
4
C
A
5
G
G
13
C
C
21
T
A
22
T
T
28
C
T
48
C
G
58
A
A
60
T
G
63
A
T
64
C
T
67
A
C
69
T
T
88
C
C
90
A
C
100
A
G
101
A
Show more
Deletions
7-11, 94, 308-310, 7336, 7337
Insertions
ins_0:GCTC, ins_127:ACT, ins_573:T, ins_7409:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
Amino acid substitutions
Substitutions called relative to the
AY421767.1
reference
Substitutions
2A
2A:
Y
15
F
2A:
V
29
A
2A:
S
37
T
2A:
T
52
I
2A:
L
123
I
2B
2B:
S
3
T
2B:
V
47
I
2B:
S
85
A
2B:
S
94
P
2B:
M
95
I
2C
2C:
K
41
R
2C:
N
48
S
2C:
I
76
M
2C:
V
108
M
2C:
K
293
R
2C:
M
306
V
2C:
V
320
I
3A
3A:
I
8
V
3A:
T
17
A
3A:
E
39
D
3A:
A
66
V
3B
3B:
V
15
I
3C
3C:
A
18
V
3C:
Q
22
H
3C:
I
30
V
3C:
I
36
V
3C:
I
49
V
3C:
V
75
I
3C:
T
93
N
3C:
A
95
S
3C:
G
96
A
3C:
I
116
V
3C:
I
157
V
3D
3D:
M
6
V
3D:
N
32
D
3D:
T
44
H
3D:
K
46
R
3D:
V
74
I
3D:
T
75
K
3D:
Q
76
E
3D:
K
94
Q
3D:
V
134
A
3D:
T
138
V
3D:
L
143
F
3D:
L
165
I
3D:
T
190
A
3D:
V
197
T
3D:
I
205
V
3D:
S
236
G
3D:
T
308
A
3D:
R
346
K
Show more
VP1
VP1:
S
13
G
VP1:
T
21
N
VP1:
G
23
A
VP1:
Q
24
T
VP1:
D
25
S
VP1:
N
27
E
VP1:
T
28
S
VP1:
G
31
N
VP1:
A
33
V
VP1:
E
61
G
VP1:
M
70
V
VP1:
S
81
N
VP1:
V
107
T
VP1:
E
141
A
VP1:
F
148
Y
VP1:
V
178
I
VP1:
Q
223
L
VP1:
I
261
V
Show more
VP2
VP2:
L
132
I
VP2:
S
137
A
VP2:
N
150
T
VP2:
A
157
T
VP2:
S
160
T
VP2:
N
162
H
VP2:
S
176
A
VP2:
I
216
V
VP2:
V
237
I
VP3
VP3:
L
2
V
VP3:
T
4
A
VP3:
S
29
T
VP3:
S
33
I
VP3:
R
41
H
VP3:
N
65
T
VP3:
A
73
S
VP3:
I
131
V
VP4
VP4:
S
7
T
VP4:
R
9
K
VP4:
S
42
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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