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LOC_000LRNR.1
Download
Download FASTA
Download metadata TSV
India/LOC_000LRNR.1/2011
P. D. Yadav
National Institute of Virology, Maximum Containment Laboratory
Sample details
Collection date
2011
Earliest release date
2019-04-01
Sampling location
India (Shahjahanpur district, Uttar Pradesh State)
Isolate name
11-862-1
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-04-01
NCBI update date
2019-04-01
INSDC accession
MH118059.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MH118059.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-08 10:33:39 UTC
Date released
2026-10-08 10:41:22 UTC
Clade
Clade CV-A10
F
Genotype
Genotype
CV-A10
Alignment and QC
Total SNPs
1613
Total inserted nucs
15
Total deleted nucs
6
Length
7395 (99.7%)
Nucleotide mutations
Mutations called relative to the
AY421767.1
reference
Substitutions
T
48
C
C
62
T
T
64
C
A
89
C
C
90
A
T
95
A
G
101
A
T
103
C
C
108
A
A
109
C
T
110
G
T
117
C
C
120
T
C
125
A
T
126
A
T
130
C
G
133
A
C
137
T
Show more
Deletions
96, 308-310, 7335, 7336
Insertions
ins_127:C, ins_570:C, ins_7409:CATCCCAAATTAT
Amino acid substitutions
Substitutions called relative to the
AY421767.1
reference
Substitutions
2A
2A:
I
10
V
2A:
V
29
A
2A:
S
37
T
2A:
L
123
I
2A:
V
137
I
2B
2B:
V
47
I
2B:
S
85
A
2B:
S
94
P
2B:
M
95
I
2C
2C:
K
41
R
2C:
I
76
M
2C:
V
108
M
2C:
K
268
R
2C:
K
293
R
2C:
M
306
V
2C:
V
320
I
3A
3A:
S
30
C
3A:
E
39
D
3A:
N
50
D
3B
3B:
A
10
V
3B:
K
12
R
3B:
V
15
I
3C
3C:
A
18
V
3C:
I
30
V
3C:
I
36
V
3C:
K
45
N
3C:
I
49
V
3C:
T
93
N
3C:
A
95
S
3C:
G
96
A
3C:
I
116
V
3C:
I
157
V
3D
3D:
M
6
V
3D:
P
8
S
3D:
I
17
V
3D:
N
32
D
3D:
T
44
H
3D:
K
46
R
3D:
V
74
I
3D:
T
75
K
3D:
Q
76
E
3D:
N
91
D
3D:
K
94
Q
3D:
V
134
T
3D:
T
138
V
3D:
L
143
Y
3D:
L
165
I
3D:
K
169
R
3D:
T
190
A
3D:
V
197
T
Show more
VP1
VP1:
S
13
G
VP1:
T
21
N
VP1:
S
22
N
VP1:
G
23
A
VP1:
Q
24
T
VP1:
D
25
S
VP1:
V
26
I
VP1:
N
27
E
VP1:
T
28
S
VP1:
G
31
N
VP1:
A
33
V
VP1:
M
70
V
VP1:
A
78
T
VP1:
S
81
N
VP1:
V
107
T
VP1:
E
141
Q
VP1:
F
148
Y
VP1:
V
178
I
Show more
VP2
VP2:
L
132
I
VP2:
S
137
A
VP2:
N
150
T
VP2:
A
157
T
VP2:
S
160
T
VP2:
N
162
H
VP2:
V
166
I
VP2:
S
176
A
VP2:
I
216
V
VP2:
S
227
T
VP2:
V
237
I
VP3
VP3:
L
2
I
VP3:
T
4
A
VP3:
S
29
T
VP3:
S
33
T
VP3:
R
41
H
VP3:
D
60
E
VP3:
N
65
T
VP3:
A
73
S
VP3:
I
131
V
VP4
VP4:
S
7
T
VP4:
R
9
K
VP4:
S
42
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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