This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LRNR.1

USA/BB17L-7-25-Otr/2018-07-25
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-07-25
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
BB17L-7-25-Otr

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ201882.1
Submitting group
Date submitted
2026-07-06 18:28:28 UTC
Date released
2026-07-06 18:50:29 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
78
Total unknown nucs
1615
Length
10462 (80.2%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS1:Y35H
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:F17L
  • NS4B:N26T
  • NS5:K177R
  • NS5:A860V
  • env:K93R
  • env:T126V
  • env:I159A
  • env:T187I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C474T
  • T585C
  • A630G
  • C631T
  • C720T
  • G756A
  • A1342G
  • G1419A
  • T1442C
  • C1465T
  • C1526T
  • G1680A
  • C1704T
  • G1860A
  • C1911T
  • C1959T
  • T2166A
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS1

  • NS1:Y35H

NS4B

  • NS4B:F17L
  • NS4B:N26T

NS5

  • NS5:A860V

env

  • env:I126V
  • env:V159A
  • env:L167F
  • env:T187I
Deletions
N/A
Insertions
N/A

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