This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LRNR.1

Display Name: USA/LOC_000LRNR.1/2017-07-19
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2017-07-19
Collection date (lower bound)
2017-07-19
Collection date (upper bound)
2017-07-19
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
ST64L-7-19-Cxp

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-04 15:41insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10917
Total SNPs
89
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
98.98%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
OZ201916.1
Submitting group
Date submitted
2025-12-04 15:41:50 UTC
Date released
2025-12-04 15:59:15 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A157G
  • A630G
  • C687T
  • A939G
  • A1401G
  • T1442C
  • C1465T
  • T1656C
  • A1920G
  • T1965C
  • A2097C
  • C2371T
  • C2466T
  • T2475C
  • T2607C
  • T2772C
  • T3069C
  • T3138C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:D326G

    • NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • capsid

  • capsid:M21V

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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