This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LPRM.1

Display Name: USA/LOC_000LPRM.1/2016-08-23
Feriancek, N. M.; Breban, M. I.; Bourgikos, E.; Bransfield, A.; Armstrong, P. M.; Vogels, C. B.; Grubaugh, N. D.

Submission details

Submission ID
OZ201867.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 11:36:39 UTC
Date released
2025-04-03 11:43:37 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-03 11:36insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

Bioproject accession
PRJEB80643
Biosample accession
SAMEA116354284
INSDC accession
OZ201867.1
NCBI release date
2024-11-07
NCBI update date
2024-11-08

Alignment and QC metrics

Completeness
98.98%
Length
11029
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
87
Total stop codons
0
Total unknown nucs
112

Sample details

Earliest release date
2024-11-07
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2016-08-23
Collection date (lower bound)
2016-08-23
Collection date (upper bound)
2016-08-23
Isolate name
WR91G-8-23-Cxr

Host

Host name scientific
Culex restuans
Host taxon id
38742

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • A630G
  • C849T
  • A1401G
  • T1442C
  • C1465T
  • T1965C
  • A2097C
  • T2356C
  • C2371T
  • T2394C
  • C2440T
  • C2466T
  • T2475C
  • C2784T
  • C3033T
  • T3138C
  • C3504T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T
  • NS3:S454N

    • NS4B

  • NS4B:S14V

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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