This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LPPR.1

USA/VV01-25-Q-16962-WNV-M08760-240723/2025-07-16
N. Rhoades, L. Batoon, S. Hallis, S. Vo, R. Flores, N. Gurfeild & J. Corrigan

San Diego County Public Health Lab, San Diego, CA

Sample details

Collection date
2025-07-16
Earliest release date
2025-08-26
Sampling location
USA (California; San Diego County)
Isolate name
VV01-25-Q-16962-WNV-M08760-240723

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-26
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ309041.1
Submitting group
Date submitted
2026-03-21 21:23:31 UTC
Date released
2026-03-21 21:47:01 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
108
Total unknown nucs
204
Length
10933 (97.3%)
Amino Acid Mutations from founder clade
  • 2K:V9M
  • 2K:L15M
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:E150D
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • G219A
  • C435T
  • A630G
  • C672T
  • C720T
  • T946C
  • T1206C
  • G1338A
  • C1386A
  • A1401G
  • G1416C
  • T1442C
  • C1465T
  • T1902A
  • T1965C
  • T2052C
  • A2097C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:V9M

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

env

  • env:E150D
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue