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LOC_000LP20.1
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Download FASTA
Download metadata TSV
USA/MF51G-8-24-Cxp/2016-08-24
N. M. Feriancek,
M. I. Breban,
E. Bourgikos,
A. Bransfield,
P. M. Armstrong,
C. B. Vogels &
N. D. Grubaugh
Yale School of Public Health, New Haven, CT
Sample details
Collection date
2016-08-24
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
MF51G-8-24-Cxp
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 17:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
OZ201828.1
Bioproject accession
PRJEB80643
Biosample accession
SAMEA116354285
Host
Host
Culex pipiens
Submission details
Submission ID
OZ201828.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:57:25 UTC
Date released
2026-03-10 18:17:15 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LP20.1.embl
Alignment and QC
Total SNPs
97
Total deleted nucs
1
Length
10916 (99%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS2A:
I
129
V
NS2A:
R
188
K
NS2B:
A
103
V
NS2B:
V
120
I
NS3:
T
249
P
NS3:
I
356
A
NS3:
F
486
L
NS3:
I
583
T
NS4A:
V
85
A
NS4B:
T
48
A
NS5:
K
177
R
NS5:
V
207
I
NS5:
D
635
G
capsid:
K
104
R
env:
K
93
R
env:
T
126
I
env:
I
159
A
env:
I
253
V
prM:
V
140
A
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
52
T
C
340
T
A
407
G
C
435
T
A
630
G
C
672
T
T
884
C
C
937
T
C
1170
T
G
1191
A
C
1227
T
C
1317
T
T
1442
C
C
1465
T
G
1662
A
C
1707
T
A
1723
G
C
1750
T
Show more
Deletions
10451
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
NS2A
NS2A:
I
129
V
NS2A:
R
188
K
NS2B
NS2B:
V
120
I
NS3
NS3:
T
356
A
NS3:
F
486
L
NS3:
I
583
T
NS4B
NS4B:
T
48
A
NS5
NS5:
V
207
I
NS5:
D
635
G
capsid
capsid:
K
104
R
env
env:
V
159
A
env:
L
167
F
env:
I
253
V
prM
prM:
V
140
A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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