This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LP04.1

USA/SM88G-8-14-Cxr/2018-08-14
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-08-14
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
SM88G-8-14-Cxr

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-16 20:49insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ201819.1
Submitting group
Date submitted
2026-03-16 20:49:08 UTC
Date released
2026-03-16 21:06:06 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
93
Total inserted nucs
1
Total ambiguous nucs
1
Length
10918 (99%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • capsid:R105K
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C315T
  • C340T
  • G410A
  • C435T
  • C450T
  • A630G
  • C1158A
  • T1290C
  • C1422T
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1767C
  • G2163A
  • C2199T
  • C2227T
  • C2304T
Deletions
N/A
Insertions

ins_10446:T

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS4B

  • NS4B:I240M

capsid

  • capsid:R105K

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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