This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LNMW.1

Display Name: USA/LOC_000LNMW.1/2014-09-09
C. Aroh, M. D'Anton, C. Liang, P. Raj, B. Wakeland, N. Yan & E. Wakeland

Sample details

Collection date
2014-09-09
Collection date (lower bound)
2014-09-09
Collection date (upper bound)
2014-09-09
Earliest release date
2018-12-31
Collection country
USA
Collection subdivision level 1
El Paso Co. TX
Isolate name
AVA1406295

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-28 14:56insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UT Southwestern Medical Center, Department of Immunology

INSDC

NCBI release date
2018-12-31
NCBI update date
2018-12-31
INSDC accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
11032
Total SNPs
77
Total inserted nucs
3
Total deleted nucs
0
Total ambiguous nucs
8
Total unknown nucs
0
Total frame shifts
2
Frame shifts
prM:98-167(nt:757-966),NS3:570-619(nt:6319-6468)
Completeness
99.93%
Total stop codons
0

Submission details

Submission ID
MF175866.1
Submitting group
Date submitted
2026-01-28 14:56:35 UTC
Date released
2026-01-28 15:12:49 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G96A
  • A630G
  • C660T
  • T884C
  • C1056T
  • T1071C
  • T1107C
  • C1122T
  • G1185A
  • A1320G
  • T1442C
  • C1465T
  • C1671T
  • C1974T
  • T2241G
  • G2268A
  • T2356C
  • C2388T
    • Deletions
    None
    Insertions
    ins_756:C, ins_762:A, ins_6318:C

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:K190R

    • NS4A

  • NS4A:A85T

    • NS5

  • NS5:S262N
  • NS5:K314R
  • NS5:A860T
  • NS5:T898I

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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