This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LNMW.1

Indonesia/LOC_000LNMW.1/2019
A. Wiyatno, I. Amir, R. Kinobe, M. M. Djer, A. Adrianne, T. Dorothy, A. A. R. Khafiani, I. M. Artika, D. Safari, K. S. Myint & N. D. Putri

Eijkman Institute for Molecular Biology, Emerging Virus Research Unit

Sample details

Collection date
2019
Earliest release date
2021-06-22
Sampling location
Indonesia
Isolate name
Jakarta

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-29 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-06-22
NCBI update date
2021-06-22
INSDC accession

Host

Host

Submission details

Submission ID
MT431549.1
Submitting group
Date submitted
2026-05-29 16:00:06 UTC
Date released
2026-05-29 16:07:57 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
137
Length
736 (9.94%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • A2430T
  • A2438G
  • G2441A
  • C2444T
  • A2447G
  • T2462C
  • G2465A
  • T2480C
  • A2491G
  • C2495A
  • C2503A
  • A2504G
  • T2507C
  • T2508C
  • A2510G
  • T2513G
  • C2525A
  • C2527A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T

VP3

  • VP3:T240S
Deletions
N/A
Insertions
N/A

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