This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000LNLY.1
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Display Name: USA/LOC_000LNLY.1/2016-08-03
Feriancek,
N. M.; Breban,
M. I.; Bourgikos,
E.; Bransfield,
A.; Armstrong,
P. M.; Vogels,
C. B.; Grubaugh,
N. D.
Submission details
Submission ID
OZ201814.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-12 12:47:29 UTC
Date released
2024-12-12 12:54:28 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-12 12:47
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Yale School of Public Health, New Haven, CT
INSDC
Bioproject accession
PRJEB80643
Biosample accession
SAMEA116354234
INSDC accession
OZ201814.1
NCBI release date
2024-11-07
NCBI update date
2024-11-08
Alignment states and QC metrics
Completeness
98.98%
Length
11029
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
83
Total stop codons
0
Total unknown nucs
112
Sample details
Earliest release date
2024-11-07
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2016-08-03
Collection date (lower bound)
2016-08-03
Collection date (upper bound)
2016-08-03
Isolate name
SM62G-8-3-Cxp-2
Host
Host name scientific
Culex pipiens
Host taxon id
7175
Lineage
Lineage
1A
Nucleotide mutations
Substitutions
A
630
G
T
1150
C
A
1311
G
A
1401
G
T
1442
C
C
1465
T
G
1545
A
T
1965
C
T
1983
C
A
2097
C
C
2371
T
C
2466
T
T
2841
C
C
2991
T
T
3021
C
T
3138
C
C
3504
T
C
3680
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NS2A
NS2A:
T
52
I
NS2A:
L
95
F
NS3
NS3:
S
334
T
NS4B
NS4B:
S
14
I
env
env:
V
159
A
env:
L
167
F
Deletions
None
Insertions
None
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